Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00172 ATGGAGCTATTCCCAGCACAGCCAGATTTATCCCTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCTTCTTGGATAACAACGCCTTCTCAAGAAGAAGTTGATTTGAGGTTTTGGAATAATCTTAGTTTGGAGTCCACTAAATCCACTCCCAAACACCCCCCTCCACCTCCGCCTCCTAATCATCATCTTCATCATCATCATCATCATATCTCCGCTCCCCTTTTCGAAACCCTAAACAAAACCCGACACCGACCCGCCATTTTCCACCACGATACGACATCGCTGCTCAACCCGCCACCACCGCCTCCCCCGCTCCCGTTTCCAGGATTCTTGCAACCCATTAGAGGAATTCCGGTGTACCATCAAACAATTAACCCCTCCGGTATCGGTGTCGATGGTGGCCGAGGCGTTACTCCCTCTACCGTCGACCACCGCCAGATTATGATGCGGTCGAGGTTCTTGTCTAGGTTTCCAGCCAAACGAAGCATGAGAGCCCCACGGATGAGATGGACATCAACTCTTCACGCTCGCTTCGTTCATGCCGTCGAACTTCTCGGCGGCCACGAAAGAGCCACACCGAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACAGAACAGTGAAGACTACAGACAGAGCTGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGATATTCAAAAGCCAGCCATGGGAAGGCAAAATGAGAGCTTAGTTCATCAAACAACAAGGCAAAACCCTCTTCAAGACAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAACGATTCTTCTCGGGACCTTTCTTCGTCCCTCGAGAATGATACGGATCCAAAGTGCTCAAATAACGAGAGACTATCGGAAAGAAGCTCATCGTCCGATGATTGTGGAGGGACAAACTCTCACAAGCCAAATTTAGAATTCACATTAGGAAGGCCAATTTGA 1062 47.18 MELFPAQPDLSLQISPPNTNKPSSSWITTPSQEEVDLRFWNNLSLESTKSTPKHPPPPPPPNHHLHHHHHHISAPLFETLNKTRHRPAIFHHDTTSLLNPPPPPPPLPFPGFLQPIRGIPVYHQTINPSGIGVDGGRGVTPSTVDHRQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNESLVHQTTRQNPLQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDPKCSNNERLSERSSSSDDCGGTNSHKPNLEFTLGRPI 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1554049 1558343 - Carg25340-RA Car19g00172 167139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00172 353 MobiDBLite consensus disorder prediction 46 70 - -
Car19g00172 353 MobiDBLite consensus disorder prediction 1 30 - -
Car19g00172 353 MobiDBLite consensus disorder prediction 331 345 - -
Car19g00172 353 MobiDBLite consensus disorder prediction 11 30 - -
Car19g00172 353 MobiDBLite consensus disorder prediction 303 353 - -
Car19g00172 353 MobiDBLite consensus disorder prediction 309 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00304 Car-Chr1:1695691 Car19g00172 Car-Chr19:1554049 1.35E-46 dispersed
Car13g00809 Car-Chr13:8878771 Car19g00172 Car-Chr19:1554049 1.36E-39 dispersed
Car18g00078 Car-Chr18:409922 Car19g00172 Car-Chr19:1554049 1.07E-38 dispersed
Car16g01117 Car-Chr16:9609693 Car19g00172 Car-Chr19:1554049 5.55E-07 wgd
Car19g00172 Car-Chr19:1554049 Car02g01391 Car-Chr2:9146192 2.97E-141 wgd
Car19g00172 Car-Chr19:1554049 Car06g00565 Car-Chr6:3216703 2.40E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5249 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00172 - - cpep:111811344 646.736