Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car19g00172 | ATGGAGCTATTCCCAGCACAGCCAGATTTATCCCTCCAAATTAGCCCTCCAAATACCAATAAACCCTCTTCTTCTTGGATAACAACGCCTTCTCAAGAAGAAGTTGATTTGAGGTTTTGGAATAATCTTAGTTTGGAGTCCACTAAATCCACTCCCAAACACCCCCCTCCACCTCCGCCTCCTAATCATCATCTTCATCATCATCATCATCATATCTCCGCTCCCCTTTTCGAAACCCTAAACAAAACCCGACACCGACCCGCCATTTTCCACCACGATACGACATCGCTGCTCAACCCGCCACCACCGCCTCCCCCGCTCCCGTTTCCAGGATTCTTGCAACCCATTAGAGGAATTCCGGTGTACCATCAAACAATTAACCCCTCCGGTATCGGTGTCGATGGTGGCCGAGGCGTTACTCCCTCTACCGTCGACCACCGCCAGATTATGATGCGGTCGAGGTTCTTGTCTAGGTTTCCAGCCAAACGAAGCATGAGAGCCCCACGGATGAGATGGACATCAACTCTTCACGCTCGCTTCGTTCATGCCGTCGAACTTCTCGGCGGCCACGAAAGAGCCACACCGAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACAGAACAGTGAAGACTACAGACAGAGCTGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGATATTCAAAAGCCAGCCATGGGAAGGCAAAATGAGAGCTTAGTTCATCAAACAACAAGGCAAAACCCTCTTCAAGACAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAACGATTCTTCTCGGGACCTTTCTTCGTCCCTCGAGAATGATACGGATCCAAAGTGCTCAAATAACGAGAGACTATCGGAAAGAAGCTCATCGTCCGATGATTGTGGAGGGACAAACTCTCACAAGCCAAATTTAGAATTCACATTAGGAAGGCCAATTTGA | 1062 | 47.18 | MELFPAQPDLSLQISPPNTNKPSSSWITTPSQEEVDLRFWNNLSLESTKSTPKHPPPPPPPNHHLHHHHHHISAPLFETLNKTRHRPAIFHHDTTSLLNPPPPPPPLPFPGFLQPIRGIPVYHQTINPSGIGVDGGRGVTPSTVDHRQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNESLVHQTTRQNPLQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDPKCSNNERLSERSSSSDDCGGTNSHKPNLEFTLGRPI | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1554049 | 1558343 | - | Carg25340-RA | Car19g00172 | 167139 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car19g00172 | 353 | MobiDBLite | consensus disorder prediction | 46 | 70 | - | - | |
Car19g00172 | 353 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Car19g00172 | 353 | MobiDBLite | consensus disorder prediction | 331 | 345 | - | - | |
Car19g00172 | 353 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
Car19g00172 | 353 | MobiDBLite | consensus disorder prediction | 303 | 353 | - | - | |
Car19g00172 | 353 | MobiDBLite | consensus disorder prediction | 309 | 330 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g00304 | Car-Chr1:1695691 | Car19g00172 | Car-Chr19:1554049 | 1.35E-46 | dispersed | |
Car13g00809 | Car-Chr13:8878771 | Car19g00172 | Car-Chr19:1554049 | 1.36E-39 | dispersed | |
Car18g00078 | Car-Chr18:409922 | Car19g00172 | Car-Chr19:1554049 | 1.07E-38 | dispersed | |
Car16g01117 | Car-Chr16:9609693 | Car19g00172 | Car-Chr19:1554049 | 5.55E-07 | wgd | |
Car19g00172 | Car-Chr19:1554049 | Car02g01391 | Car-Chr2:9146192 | 2.97E-141 | wgd | |
Car19g00172 | Car-Chr19:1554049 | Car06g00565 | Car-Chr6:3216703 | 2.40E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
5249 | None | None | None | None | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car19g00172 | - | - | cpep:111811344 | 646.736 |