Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00175 ATGTATGGAGATTGCCAAGTGATATCAAGCAATATGGGAACAAACATAAACCCTAATTTCAATTTCATCTCCAATTTCCAACACTTTTCTTCCATATTGCCTAAGGAGGAAAATGGGGTATTGAGAGGGAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAGCAGCTTGTTGAAGAACATCAAGGAATAATTGAAATGGATAGCAATAATGATAATGTTCTTCACCAAAATTTGAAGAAGAAACGCTATCATAGGCATACTGCTCGTCAGATCCAAGAAATGGAGGCTTTGTTTAAGGAATGTCCACACCCTGATGACAAGCAGAGGCTTAAACTTAGCCAAGAACTCGGACTCAAACCTCGTCAAGTTAAGTTTTGGTTCCAAAATCGAAGAACCCAGATGAAGGCACAACACGACAGAGCTGATAATGTCATACTTCGAGCTGAAAATGAAACCTTAAAAAATGAGAATTATAGACTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTTGGGGAACCTAGCTTGGATGAACAGCAGCTTCGTCTCGAGAATGCTAGGCTTCGAGATCAGTTGGAACAAGTTTGCTCGATGACCACAAGATACACTGGTCGCCCAATTGAAGGGATGCCCATGCAACCATCTTTGGATTTGGACATGAATATATACTCGAGGCAATACACGGAGGCCATGGTTTCGTCCTCCGACATGATGTCGATGCCCTCGATGCTCCCGCCCGAGGCTGCCCACTTCTCGAAGGGCGACCTATTAATTGATGAGGAAAAGACACTGGCAATGGACTTGGCTGTGTCGTCCATAGCTGAACTTGTTAAGATGTGTCGCTCGACTGAGCCTCTTTGGGTTCGAGATAGCGAGAGCGGTAAGGACATTCTAAATGTCGAAGAGCATGCCAGGATGTTTCCATGGCCATTGAACCTCAAGCAACACTTGATCAATGAGTTTAGGACCGAAGCCACTCGTGACAGCGCCGTTGTTATAATGAATAGCATAACTCTTGTCGACGCCTTTCTTGATGCCAACAAATGGATGGAACTATTTCCTTCAATTGTGGCCAAAGCAAGAACTATTCAAGTCATTTCATCAAGTGTTTCAGGCCATGCTAGTGGTTCCCTTCAGCTGATGTATGCTGAACTTCAAGCCCTTTCTCCGCTCGTTCCGACGAGAGAAGCTCACTTTCTCCGGTGCTGCCAACAGAACGCCGACGAAGGAAGCTGGGCCATCGTCGATTTCCCGATCGACACCTTTCACGACAGCCTTCAGCACTCATTTCCGAGATACAGAAGAAAGCCCTCTGGTTGCATTATTCAAGACATGCCCAATGGATACTCTAGGGGTGTGAAAACGTCAGCTAAATTGTTTCCGCTCTCCTCGAACATAGAATCATCAGAAGAGACTGAAATAGTTACATGGGTGGAGCATGGAGAGATAGAAGAGAAACCAATCCATCAAATATTCAATCACTTTGTGCATAGTGGAATGGCTTTTGGGGCACACCGTTGGTTGGCTATCTTACAAAGGCAATGCGAGAGAATTGCAAGCCTCATGGCTAGAAACATCTCTGATCTTGGAGTAATACCTTCACCGGAAGCTAGACAAAACCTAATGAAACTAGCACAAAGAATGATCAGAACTTTCTCCGTCAACATAAGCACCTCCGGTGCCCAGTCGTGGACGGCGTTATCTGAATCTCCTGATGATACTGTTCGTATAACCACACGAAAAATCGTCGAGCCTGGCCAACCTAATGGGGTTATTCTTAGCGCCGTCTCGACCACTTGGCTTCCTTATCCTCATTATCGAGTCTTCGATCTTCTTCGAGACGAACGTCGACGGTCTCAGCTCGAGGTTCTTTCGAACGGGAATTCGCTGCATGAGGTGGCTCACATTGCCAATGGCTCTCACCCTGGAAATTGCATCTCTCTTCTTCGTATCAATGTGGCCAGCAACTCGTCCCAGCACGTCGAGCTAATGCTGCAAGAGAGCTGCACGGATCAGTCGGGCAGCCTCGTTGTCTACGCAACGATCGATGTCGATTCAATTCAATTAGCCATGAGTGGAGAAGACCCATCTTGCATTCCTCTCCTCCCCATAGGATTTTCCATTGTCCCCGTCGTTGGGTCTACCGTTGACGGACACCCATCACCACCACCCGAAGACGGTGTCGCTAACTCCGGCTGCCTCCTTACCGTCGGCCTGCAAGTTCTAGCCAGCACTATTCCATCAGCAAAGCTCAACCTATCAAGCGTTACTGCCATCAACAACCACCTATGTAACACGGTGCACCAAATCAACGCCGCTCTTGGCAGCCCGACTAGTATCGAGAACGGTAATACCATTGCTGAGCCTAATAATGCACCGGCGCCGGCACCGGCACCGGCGCCGGCACCCAAGCAATAA 2439 47.52 MYGDCQVISSNMGTNINPNFNFISNFQHFSSILPKEENGVLRGKEDMESGSGSEQLVEEHQGIIEMDSNNDNVLHQNLKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQHDRADNVILRAENETLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSMTTRYTGRPIEGMPMQPSLDLDMNIYSRQYTEAMVSSSDMMSMPSMLPPEAAHFSKGDLLIDEEKTLAMDLAVSSIAELVKMCRSTEPLWVRDSESGKDILNVEEHARMFPWPLNLKQHLINEFRTEATRDSAVVIMNSITLVDAFLDANKWMELFPSIVAKARTIQVISSSVSGHASGSLQLMYAELQALSPLVPTREAHFLRCCQQNADEGSWAIVDFPIDTFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRGVKTSAKLFPLSSNIESSEETEIVTWVEHGEIEEKPIHQIFNHFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGAQSWTALSESPDDTVRITTRKIVEPGQPNGVILSAVSTTWLPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYATIDVDSIQLAMSGEDPSCIPLLPIGFSIVPVVGSTVDGHPSPPPEDGVANSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINAALGSPTSIENGNTIAEPNNAPAPAPAPAPAPKQ 812
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1586106 1592954 - Carg25343-RA Car19g00175 167142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00175 812 Pfam Homeodomain 80 135 IPR001356 GO:0003677
Car19g00175 812 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Car19g00175 812 Pfam START domain 276 524 IPR002913 GO:0008289
Car19g00175 812 MobiDBLite consensus disorder prediction 788 812 - -
Car19g00175 812 ProSiteProfiles START domain profile. 265 527 IPR002913 GO:0008289
Car19g00175 812 Coils Coil 131 151 - -
Car19g00175 812 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00175 Car-Chr19:1586106 Car19g00719 Car-Chr19:8221874 0 dispersed
Car19g00175 Car-Chr19:1586106 Car02g01388 Car-Chr2:9122699 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5251 PF01852 START 6.20E-38 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00175 - - csv:101212772 1379.0