Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car19g00180 | ATGAGAAGCCATGGATCATCACCATGTTCGTACGAGGAGGAGGCCATGGACAAGGAGGATGAACACAAAGTGAAGAAGAAGAAGAAGGAGCACCAAAACAAAGTTGCTTTTTATAAGCTTTTTGCTTTTGCTGATTGTTATGATTATTTTCTCATGGCTTTTGGTTCCATTGGAGCTTGTCTTCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGGAAGCTTATTAATATCATTGGTATGGCTTATCTCTTCCCCGAAGAAGCTGCTCCAAAAGTTGCCAAGTACTCTTTGGATTTTTTATACCTAAGTGTGGCTATACTATTCTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGAGAGAGACAAGCAGCCAAAATGAGAATGGCTTATTTAAGATCAATGTTGAGTCAAGACATTAGCCTCTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACAAGTGATATTGTTGTTGTTCAAGACGCCATTTCCGAGAAGGTGGGGAACTTTTTGCACTATATAAGCCGGTTTATATCAGGGTTTATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTTCCCTTGATTGCACTTGCTGGTGGTCTCTATGCTTTTGTCACCATTGGACTTATTGCCAAAATAAGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGGGAAGAAAGGGCTGTAGGATTATACAAAGGAGCTCTCAGGAATACCTACAAGTATGGTAGAAAGGCAGGGCTGGCTAAGGGACTTGGCCTGGGATCGATGCATTGTGTTCTTTTCTTGTCATGGGCTCTGCTAGTTTGGTTTACCAGCATTGTTGTTCATAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTTGGGCAGGCTGCACCAGATATTTCTGCCTTCGTTCGAGCAAAGGCAGCAGCGTATCCTATTTTTCAGATGATAGAAAGAAACACAGTTAGCAAAAGCAGCTCCAAAATTGGTCGGAAACTAAACAAGCTCGACGGTCATATTCAATTCAAGGATGTCAGTTTCAGCTATCCTTCTCGTTCGGATGTAATTATATTTAATAAGTTATCTCTCGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGGTCAGGAAAGAGCACGGTCATATCTTTGATCGAACGGTTCTATGAACCGATTTCTGGAGAGATTCTACTAGATGGTAATAACATCAAGGAGCTGGATCTCAAATGGCTTAGGCAGCAAATTGGTCTGGTCAATCAAGAGCCTGCCCTCTTTGCTACGAGCATTAGGGAGAACATTCTATATGGAAAAGACGATGCTACGCTCGAGGACATCACACGTGCAGCGAAACTTTCTGAGGCGTTATCGTTTATAAACAATCTCCCTGAAAGATTCGAAACTCAGGTTGGTGAAAGAGGGGTCCAATTATCTGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCAATCGTTAAAAATCCATCGATCCTGCTGTTGGATGAGGCAACCAGTGCACTAGATGCAGAATCCGAGAAGAGTGTTCAAGAAGCACTCGATCGTGTCATGGTTGGTCGAACGACTGTAGTGGTCGCTCATCGTCTATCTACCATAAGGAATGCAGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCATGATGAGCTCATTTCAAACCCGGACAGTGTTTATGCATCACTTGTACAGTTTCAAGAAACGGCATCTCTGCAACGCCATCCTTCGATCGGACAGTTGGGTCGACCACCAAGTATAAAGTACTCGCGAGAATTATCTCGCACTACAACAAGCTTTGGTGCGAGTTTTCGCTCTGAGAAAGAATCTCTGGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCGAAGCATGTTTCAGCAAAAAGACTATACTCCATGGTTGGACCGGATTGGATGTATGGAGTCGTTGGCGTCATTGGAGCGTTCGTTACGGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTTTATATGGACTGGAATACAACTCAACATGAGATCAAGAAGATTTCTTTGCTTTTCTGTGGTGGTGCAGTCTTAACCGTCATTTTTCATGCAGTCGAGCATCTCTGTTTTGGAATTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATGTTGAGAAACGAGATAGGATGGTTCGATGATATAGACAACACGAGTGCTATGCTTTCGTCACGCCTAGAAACCGATGCAACTTTGTTACGAACTATAGTTGTCGACCGCTCGACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCATTCATATTGAATTGGAGAATCACTTTAGTTGTCCTGGCTACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTATGGTGGAAATTTGAGTAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAATATTAGAACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCCTCGATCTATATGCTAAGGAGCTTGTTGAGCCCTCGAGACGTTCACTTAAACGTGGACAGATCGCTGGCATATTCTACGGTGTCTCGCAGTTCTTCATCTTTTCATCTTATGGTTTGGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTATTATGAAAGCATTCATGGTTTTGATAGTAACAGCATTAGCAATGGGTGAGACTTTGGCACTAGCCCCTGACCTTTTAAAGGGAAATCAGATGGTGGCATCAGTGTTCGAGGTGATGGATCGACAAACAGAGGTGTCGGGCGATGTCGGTGAAGAGCTAAATGTCGTGGAGGGTACCATTGAGCTGAAGAATGTCGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGATCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGCTCAGGGAAAAGCTCTGTTCTAGCCCTTATACTGCGATTCTATGATCCGATAGCTGGGAGGGTGATGATTGACGGGAGAGATATAAAAAAACTGAAGGTCAAATCTTTGAGAAAGCACATAGGCCTCGTCCAACAAGAACCGGCTCTTTTCGCCACGTCAATTTACGAGAACATTCTTTACGGGAAAGAAGGAGCTTCCGAAGCAGAAGTATTCGAAGCAGCAAAGCTCGCCAACGCGCATACCTTCATCAGTGCTCTCCCTGAAGGCTACTCAACAAAAGTCGGTGAAAGAGGGATCCAACTCTCGGGTGGGCAACGACAGAGGATAGCCATTGCACGAGCAGTCCTGAAGAACCCAGAAATCCTACTACTCGACGAAGCCACGAGCGCTCTCGACGTCGAATCAGAACGCGTCGTTCAACAAGCCTTAGATAGACTGATGAAGCACAGAACAACTGTGGTGGTTGCTCACAGGCTTTCCACCATTAAAAACTGTGACCAAATCTCAGTGATCCAAGATGGTAAGATAGTAGAACAAGGGACTCATTCGAGCCTTTGTGAGAACAAGAATGGAGCTTATTACAAGTTGATCAACATCCAACAACAGCAACAACGACAGTGA | 3765 | 44.36 | MRSHGSSPCSYEEEAMDKEDEHKVKKKKKEHQNKVAFYKLFAFADCYDYFLMAFGSIGACLHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLSQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKIRKSYVKAGEIAEEILGNVRTVQAFAGEERAVGLYKGALRNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKIGRKLNKLDGHIQFKDVSFSYPSRSDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPISGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISNPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSAKRLYSMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAMLRNEIGWFDDIDNTSAMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSIMKAFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELKNVEFSYPSRPDVLIFKDFNLKVRSGKSIALVGQSGSGKSSVLALILRFYDPIAGRVMIDGRDIKKLKVKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHTFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKHRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLCENKNGAYYKLINIQQQQQRQ | 1254 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1665406 | 1673334 | + | Carg24534-RA | Car19g00180 | 167147 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car19g00180 | 1254 | Pfam | ABC transporter transmembrane region | 57 | 324 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Car19g00180 | 1254 | Pfam | ABC transporter transmembrane region | 693 | 963 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Car19g00180 | 1254 | ProSitePatterns | ABC transporters family signature. | 515 | 529 | IPR017871 | GO:0005524 | |
Car19g00180 | 1254 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1010 | 1246 | IPR003439 | GO:0005524 | |
Car19g00180 | 1254 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 53 | 341 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Car19g00180 | 1254 | SMART | AAA_5 | 1037 | 1209 | IPR003593 | - | |
Car19g00180 | 1254 | SMART | AAA_5 | 403 | 595 | IPR003593 | - | |
Car19g00180 | 1254 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 376 | 612 | IPR003439 | GO:0005524 | |
Car19g00180 | 1254 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 691 | 977 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Car19g00180 | 1254 | Pfam | ABC transporter | 1029 | 1177 | IPR003439 | GO:0005524 | |
Car19g00180 | 1254 | Pfam | ABC transporter | 395 | 543 | IPR003439 | GO:0005524 | |
Car19g00180 | 1254 | ProSitePatterns | ABC transporters family signature. | 1149 | 1163 | IPR017871 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car11g00314 | Car-Chr11:1723116 | Car19g00180 | Car-Chr19:1665406 | 7.70E-26 | dispersed | |
Car11g00529 | Car-Chr11:2857730 | Car19g00180 | Car-Chr19:1665406 | 0 | dispersed | |
Car12g00905 | Car-Chr12:8971081 | Car19g00180 | Car-Chr19:1665406 | 7.41E-127 | dispersed | |
Car15g00274 | Car-Chr15:1488023 | Car19g00180 | Car-Chr19:1665406 | 1.05E-09 | dispersed | |
Car15g00384 | Car-Chr15:2014572 | Car19g00180 | Car-Chr19:1665406 | 3.09E-10 | dispersed | |
Car17g01214 | Car-Chr17:9247024 | Car19g00180 | Car-Chr19:1665406 | 2.17E-10 | dispersed | |
Car19g00180 | Car-Chr19:1665406 | Car20g00825 | Car-Chr20:5452716 | 1.65E-98 | dispersed | |
Car19g00180 | Car-Chr19:1665406 | Car04g02658 | Car-Chr4:20709554 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car19g00180 | K05658 | - | csv:101219304 | 2249.55 |