Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00180 ATGAGAAGCCATGGATCATCACCATGTTCGTACGAGGAGGAGGCCATGGACAAGGAGGATGAACACAAAGTGAAGAAGAAGAAGAAGGAGCACCAAAACAAAGTTGCTTTTTATAAGCTTTTTGCTTTTGCTGATTGTTATGATTATTTTCTCATGGCTTTTGGTTCCATTGGAGCTTGTCTTCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGGAAGCTTATTAATATCATTGGTATGGCTTATCTCTTCCCCGAAGAAGCTGCTCCAAAAGTTGCCAAGTACTCTTTGGATTTTTTATACCTAAGTGTGGCTATACTATTCTCATCATGGGCAGAGGTGGCTTGTTGGATGCACAGTGGAGAGAGACAAGCAGCCAAAATGAGAATGGCTTATTTAAGATCAATGTTGAGTCAAGACATTAGCCTCTTTGACACTGAAGCTTCAACTGGTGAAGTCATTGCTGCTATTACAAGTGATATTGTTGTTGTTCAAGACGCCATTTCCGAGAAGGTGGGGAACTTTTTGCACTATATAAGCCGGTTTATATCAGGGTTTATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTTCCCTTGATTGCACTTGCTGGTGGTCTCTATGCTTTTGTCACCATTGGACTTATTGCCAAAATAAGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGGGAAGAAAGGGCTGTAGGATTATACAAAGGAGCTCTCAGGAATACCTACAAGTATGGTAGAAAGGCAGGGCTGGCTAAGGGACTTGGCCTGGGATCGATGCATTGTGTTCTTTTCTTGTCATGGGCTCTGCTAGTTTGGTTTACCAGCATTGTTGTTCATAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTTGGGCAGGCTGCACCAGATATTTCTGCCTTCGTTCGAGCAAAGGCAGCAGCGTATCCTATTTTTCAGATGATAGAAAGAAACACAGTTAGCAAAAGCAGCTCCAAAATTGGTCGGAAACTAAACAAGCTCGACGGTCATATTCAATTCAAGGATGTCAGTTTCAGCTATCCTTCTCGTTCGGATGTAATTATATTTAATAAGTTATCTCTCGATATTCCTGCGGGCAAGATTGTAGCTCTTGTGGGAGGAAGTGGGTCAGGAAAGAGCACGGTCATATCTTTGATCGAACGGTTCTATGAACCGATTTCTGGAGAGATTCTACTAGATGGTAATAACATCAAGGAGCTGGATCTCAAATGGCTTAGGCAGCAAATTGGTCTGGTCAATCAAGAGCCTGCCCTCTTTGCTACGAGCATTAGGGAGAACATTCTATATGGAAAAGACGATGCTACGCTCGAGGACATCACACGTGCAGCGAAACTTTCTGAGGCGTTATCGTTTATAAACAATCTCCCTGAAAGATTCGAAACTCAGGTTGGTGAAAGAGGGGTCCAATTATCTGGGGGACAAAAGCAAAGGATTGCAATATCTCGTGCAATCGTTAAAAATCCATCGATCCTGCTGTTGGATGAGGCAACCAGTGCACTAGATGCAGAATCCGAGAAGAGTGTTCAAGAAGCACTCGATCGTGTCATGGTTGGTCGAACGACTGTAGTGGTCGCTCATCGTCTATCTACCATAAGGAATGCAGATGTGATTGCTGTCGTTCAAGAGGGGAAGATAGTTGAAACTGGAAGCCATGATGAGCTCATTTCAAACCCGGACAGTGTTTATGCATCACTTGTACAGTTTCAAGAAACGGCATCTCTGCAACGCCATCCTTCGATCGGACAGTTGGGTCGACCACCAAGTATAAAGTACTCGCGAGAATTATCTCGCACTACAACAAGCTTTGGTGCGAGTTTTCGCTCTGAGAAAGAATCTCTGGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCGAAGCATGTTTCAGCAAAAAGACTATACTCCATGGTTGGACCGGATTGGATGTATGGAGTCGTTGGCGTCATTGGAGCGTTCGTTACGGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTTTATATGGACTGGAATACAACTCAACATGAGATCAAGAAGATTTCTTTGCTTTTCTGTGGTGGTGCAGTCTTAACCGTCATTTTTCATGCAGTCGAGCATCTCTGTTTTGGAATTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATGTTGAGAAACGAGATAGGATGGTTCGATGATATAGACAACACGAGTGCTATGCTTTCGTCACGCCTAGAAACCGATGCAACTTTGTTACGAACTATAGTTGTCGACCGCTCGACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCATTCATATTGAATTGGAGAATCACTTTAGTTGTCCTGGCTACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTATGGTGGAAATTTGAGTAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAATATTAGAACTGTTGCTGCATTTTGTTCTGAGGAGAAGGTCCTCGATCTATATGCTAAGGAGCTTGTTGAGCCCTCGAGACGTTCACTTAAACGTGGACAGATCGCTGGCATATTCTACGGTGTCTCGCAGTTCTTCATCTTTTCATCTTATGGTTTGGCCTTGTGGTACGGTTCGGTCTTGATGGGACAGGGGCTTGCTAGCTTCAAATCTATTATGAAAGCATTCATGGTTTTGATAGTAACAGCATTAGCAATGGGTGAGACTTTGGCACTAGCCCCTGACCTTTTAAAGGGAAATCAGATGGTGGCATCAGTGTTCGAGGTGATGGATCGACAAACAGAGGTGTCGGGCGATGTCGGTGAAGAGCTAAATGTCGTGGAGGGTACCATTGAGCTGAAGAATGTCGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGATCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGCTCAGGGAAAAGCTCTGTTCTAGCCCTTATACTGCGATTCTATGATCCGATAGCTGGGAGGGTGATGATTGACGGGAGAGATATAAAAAAACTGAAGGTCAAATCTTTGAGAAAGCACATAGGCCTCGTCCAACAAGAACCGGCTCTTTTCGCCACGTCAATTTACGAGAACATTCTTTACGGGAAAGAAGGAGCTTCCGAAGCAGAAGTATTCGAAGCAGCAAAGCTCGCCAACGCGCATACCTTCATCAGTGCTCTCCCTGAAGGCTACTCAACAAAAGTCGGTGAAAGAGGGATCCAACTCTCGGGTGGGCAACGACAGAGGATAGCCATTGCACGAGCAGTCCTGAAGAACCCAGAAATCCTACTACTCGACGAAGCCACGAGCGCTCTCGACGTCGAATCAGAACGCGTCGTTCAACAAGCCTTAGATAGACTGATGAAGCACAGAACAACTGTGGTGGTTGCTCACAGGCTTTCCACCATTAAAAACTGTGACCAAATCTCAGTGATCCAAGATGGTAAGATAGTAGAACAAGGGACTCATTCGAGCCTTTGTGAGAACAAGAATGGAGCTTATTACAAGTTGATCAACATCCAACAACAGCAACAACGACAGTGA 3765 44.36 MRSHGSSPCSYEEEAMDKEDEHKVKKKKKEHQNKVAFYKLFAFADCYDYFLMAFGSIGACLHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLSQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKIRKSYVKAGEIAEEILGNVRTVQAFAGEERAVGLYKGALRNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKIGRKLNKLDGHIQFKDVSFSYPSRSDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPISGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISNPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSAKRLYSMVGPDWMYGVVGVIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAMLRNEIGWFDDIDNTSAMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGQGLASFKSIMKAFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELKNVEFSYPSRPDVLIFKDFNLKVRSGKSIALVGQSGSGKSSVLALILRFYDPIAGRVMIDGRDIKKLKVKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHTFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKHRTTVVVAHRLSTIKNCDQISVIQDGKIVEQGTHSSLCENKNGAYYKLINIQQQQQRQ 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1665406 1673334 + Carg24534-RA Car19g00180 167147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00180 1254 Pfam ABC transporter transmembrane region 57 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car19g00180 1254 Pfam ABC transporter transmembrane region 693 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car19g00180 1254 ProSitePatterns ABC transporters family signature. 515 529 IPR017871 GO:0005524
Car19g00180 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1246 IPR003439 GO:0005524
Car19g00180 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car19g00180 1254 SMART AAA_5 1037 1209 IPR003593 -
Car19g00180 1254 SMART AAA_5 403 595 IPR003593 -
Car19g00180 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 612 IPR003439 GO:0005524
Car19g00180 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 691 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car19g00180 1254 Pfam ABC transporter 1029 1177 IPR003439 GO:0005524
Car19g00180 1254 Pfam ABC transporter 395 543 IPR003439 GO:0005524
Car19g00180 1254 ProSitePatterns ABC transporters family signature. 1149 1163 IPR017871 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00314 Car-Chr11:1723116 Car19g00180 Car-Chr19:1665406 7.70E-26 dispersed
Car11g00529 Car-Chr11:2857730 Car19g00180 Car-Chr19:1665406 0 dispersed
Car12g00905 Car-Chr12:8971081 Car19g00180 Car-Chr19:1665406 7.41E-127 dispersed
Car15g00274 Car-Chr15:1488023 Car19g00180 Car-Chr19:1665406 1.05E-09 dispersed
Car15g00384 Car-Chr15:2014572 Car19g00180 Car-Chr19:1665406 3.09E-10 dispersed
Car17g01214 Car-Chr17:9247024 Car19g00180 Car-Chr19:1665406 2.17E-10 dispersed
Car19g00180 Car-Chr19:1665406 Car20g00825 Car-Chr20:5452716 1.65E-98 dispersed
Car19g00180 Car-Chr19:1665406 Car04g02658 Car-Chr4:20709554 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00180 K05658 - csv:101219304 2249.55