Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00205 ATGCATCTAGTGTTTGGGTTTGTGAAGTTAACTACTGTTTTAATGTCTTCTTTCATGGCTGACACAGCTTATGTTCATGCAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCTTCAAGTGGGTCACTTTTTCTCTTTGATCGAAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACAGTAAGAGAAGCACATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATCGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTCGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCCCTACGAGTGCTAGCTATTCCAGCAGTTATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCCCTTTGACACCATTTTGTGAAGATGGTGATACGGAAGACACCGGCCAAGCAACTTCAAGATTTCGCTCATTTCCCACATCACCAAAAATGGGAAATGGTCTTCTGATGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCTTCTTCCAACACATCAGTTCCTGCTGTGGATTATGTATCACAAGTTCAGAAAGATGTACTTGGGGGTAACATTTGTGGTACCAATGTGACGGATTCTCAGAAGACGCTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACATTGTACAACTGGATTTCAGACTGTACCTTCTCATGTTTTATCCTCTTTGATTGAACCTGTTTCTTCTGGAATTGTCGTTGGACAAGAGAATTCAATTTCTGGCAAGCCTTCAACCAGTAATAGTGCTATTACAGAGGATTTTGGGAGTTCTCTGACAATGAACTCAAACTGGCAGGTTTCTTTTGAAGACAATACTTCGTCCTTTTCAAAAGAGTACGTTGACCAGTTTCCAGAATTGTATTCAGTTTATGACATAGATAGCAGGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGAGCTGTCTTGTGCTCATCCTGGCATAGTGAATGAGGAGATTTTGCCAAACAACCTTGAACTACAGTTCAAAGAAGGAGAATCGTATTCTGCTATGAGGTTGAGTTCTGAAAATGATACATCTAAAGAAGGTACCGTTGGCTATTCTTTGAGTTTGAAACAATCATTAATAGACGGAGAGGAGAGTTTAAAGAAAGTCGACAGCTTCTCGAGGTGGGTATCCAGAGAGCTTGTCGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACCGTAGAATGTGGTGATATGGTAGATAATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAATAGAATTTTCTCCAAAGTGGACACTTGCAGATTTGGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTATTGGTCATGTATGTTTGGGGAAGTCGAAGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTATGCTGCCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTCACATGTTCCAACAGATTAGCATGCAGTGAGATTCGTGAGTTTGATTACTTGGCAGGCTCTGCTCAAGATGTCGATGTTACCGAAGTATATACTGCTGGTGCTACAGAGGAATTATATTTGCATATGCGATTGGAGAGGTTACTGTCCCATAGATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCATAATGTTCAAATTCAGCATCAAAACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAAGTGTACTCGTGGCTTATCCGCAAAGTCATTGAAGGTGGCAAGGGTCCTCATATATTGGATGATGAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCCGACCAATTGTCGCTGCAGGAGTGAGCATAAACTTCCGAGACATTAACGGATGGACTGCTCTCCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACATTGAATGCTGCTCCTGGATTGCTGGCTGATCCTTCTCCAGAAAATCCTTTGGGGATACCGCCATCTGAACTTGCGTCGATGAATGGGCACAAAGGGATTGCTGGTTTCCTTGCAGAGTCATCATTGACCAGCTATATCGAATCCATATCAATGGGGGAGACCGTAAAAGATGGTGTGCTGGATGTTTCAAAGAGGAAACCTGTGCATACTGTTTCTGAACGAAGGGCAACACCGATAAGTGATGGTTTTATGCCTGCTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGGCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCGGAGTGTAGTCCTGATGAACTTGGATCCTCAGATGATACTGCTATTTCATTTGCCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCCGCTGCGGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCACGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGCATATTAGACAAGATTATCTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGTTTCCGATCAGATGCAGCTGCGAAGAATCCATCCGCCGTGTTGGAACCGCCTAAAGAGGATGATTATGATTTTCTGGCGAAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTGACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACCGTCGTTCAAAAGTGCCAAGAAACCAAGGCAAGTAATATGGCTATTACTAGCACTAGAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCGCTTCTGGACGACGACGCTTTAATGTCTATGACATTTGATTGA 3312 42.48 MHLVFGFVKLTTVLMSSFMADTAYVHADIDQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPTSASYSSSYNQAASENADSPSPTSPLTPFCEDGDTEDTGQATSRFRSFPTSPKMGNGLLMNKQDAGQSNFYFPHSSSNTSVPAVDYVSQVQKDVLGGNICGTNVTDSQKTLSSASWEEILQHCTTGFQTVPSHVLSSLIEPVSSGIVVGQENSISGKPSTSNSAITEDFGSSLTMNSNWQVSFEDNTSSFSKEYVDQFPELYSVYDIDSRLTEQKSHNATFGSGHELSCAHPGIVNEEILPNNLELQFKEGESYSAMRLSSENDTSKEGTVGYSLSLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDNSSLSPSLSEDQLFSIIEFSPKWTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEIREFDYLAGSAQDVDVTEVYTAGATEELYLHMRLERLLSHRSSNPPNNLSEGALEKRNLIRELISIKEEEDCYGEEPNSHNVQIQHQNKEFLFVKLMKEKVYSWLIRKVIEGGKGPHILDDEGQGLIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAAFCGRELTVGTLITLNAAPGLLADPSPENPLGIPPSELASMNGHKGIAGFLAESSLTSYIESISMGETVKDGVLDVSKRKPVHTVSERRATPISDGFMPADLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECSPDELGSSDDTAISFAKARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDAAAKNPSAVLEPPKEDDYDFLAKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCQETKASNMAITSTREEIIEGDDMIDIDSLLDDDALMSMTFD 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1981956 1993993 - Carg24509-RA Car19g00205 167172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00205 1103 MobiDBLite consensus disorder prediction 161 234 - -
Car19g00205 1103 MobiDBLite consensus disorder prediction 161 202 - -
Car19g00205 1103 MobiDBLite consensus disorder prediction 214 234 - -
Car19g00205 1103 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Car19g00205 1103 Pfam IQ calmodulin-binding motif 952 971 IPR000048 GO:0005515
Car19g00205 1103 Pfam IQ calmodulin-binding motif 928 947 IPR000048 GO:0005515
Car19g00205 1103 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Car19g00205 1103 ProSiteProfiles IQ motif profile. 927 956 IPR000048 GO:0005515
Car19g00205 1103 ProSiteProfiles IQ motif profile. 950 974 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00205 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1768.82
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g01328 Car-Chr17:9946059 Car19g00205 Car-Chr19:1981956 4.05E-46 dispersed
Car14g01381 Car-Chr14:11622439 Car19g00205 Car-Chr19:1981956 3.80E-61 transposed
Car16g00743 Car-Chr16:4680164 Car19g00205 Car-Chr19:1981956 1.41E-61 transposed
Car11g01186 Car-Chr11:9603351 Car19g00205 Car-Chr19:1981956 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5256 PF03859 CG-1 9.20E-51 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00205 Car_Chr19 FPKM 1.665418 0.953115 1.685049 1.768589 5.157645 4.235318 5.593742 2.953833 3.80567 4.313629