Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00205 ATGCATCTAGTGTTTGGGTTTGTGAAGTTAACTACTGTTTTAATGTCTTCTTTCATGGCTGACACAGCTTATGTTCATGCAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCTTCAAGTGGGTCACTTTTTCTCTTTGATCGAAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACAGTAAGAGAAGCACATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATCGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTCGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCCCTACGAGTGCTAGCTATTCCAGCAGTTATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCCCTTTGACACCATTTTGTGAAGATGGTGATACGGAAGACACCGGCCAAGCAACTTCAAGATTTCGCTCATTTCCCACATCACCAAAAATGGGAAATGGTCTTCTGATGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCTTCTTCCAACACATCAGTTCCTGCTGTGGATTATGTATCACAAGTTCAGAAAGATGTACTTGGGGGTAACATTTGTGGTACCAATGTGACGGATTCTCAGAAGACGCTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACATTGTACAACTGGATTTCAGACTGTACCTTCTCATGTTTTATCCTCTTTGATTGAACCTGTTTCTTCTGGAATTGTCGTTGGACAAGAGAATTCAATTTCTGGCAAGCCTTCAACCAGTAATAGTGCTATTACAGAGGATTTTGGGAGTTCTCTGACAATGAACTCAAACTGGCAGGTTTCTTTTGAAGACAATACTTCGTCCTTTTCAAAAGAGTACGTTGACCAGTTTCCAGAATTGTATTCAGTTTATGACATAGATAGCAGGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGAGCTGTCTTGTGCTCATCCTGGCATAGTGAATGAGGAGATTTTGCCAAACAACCTTGAACTACAGTTCAAAGAAGGAGAATCGTATTCTGCTATGAGGTTGAGTTCTGAAAATGATACATCTAAAGAAGGTACCGTTGGCTATTCTTTGAGTTTGAAACAATCATTAATAGACGGAGAGGAGAGTTTAAAGAAAGTCGACAGCTTCTCGAGGTGGGTATCCAGAGAGCTTGTCGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACCGTAGAATGTGGTGATATGGTAGATAATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAATAGAATTTTCTCCAAAGTGGACACTTGCAGATTTGGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTATTGGTCATGTATGTTTGGGGAAGTCGAAGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTATGCTGCCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTCACATGTTCCAACAGATTAGCATGCAGTGAGATTCGTGAGTTTGATTACTTGGCAGGCTCTGCTCAAGATGTCGATGTTACCGAAGTATATACTGCTGGTGCTACAGAGGAATTATATTTGCATATGCGATTGGAGAGGTTACTGTCCCATAGATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCTCAATAAAAGAAGAAGAAGATTGTTATGGGGAAGAGCCAAATTCTCATAATGTTCAAATTCAGCATCAAAACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAAGTGTACTCGTGGCTTATCCGCAAAGTCATTGAAGGTGGCAAGGGTCCTCATATATTGGATGATGAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCCGACCAATTGTCGCTGCAGGAGTGAGCATAAACTTCCGAGACATTAACGGATGGACTGCTCTCCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACATTGAATGCTGCTCCTGGATTGCTGGCTGATCCTTCTCCAGAAAATCCTTTGGGGATACCGCCATCTGAACTTGCGTCGATGAATGGGCACAAAGGGATTGCTGGTTTCCTTGCAGAGTCATCATTGACCAGCTATATCGAATCCATATCAATGGGGGAGACCGTAAAAGATGGTGTGCTGGATGTTTCAAAGAGGAAACCTGTGCATACTGTTTCTGAACGAAGGGCAACACCGATAAGTGATGGTTTTATGCCTGCTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGGCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCGGAGTGTAGTCCTGATGAACTTGGATCCTCAGATGATACTGCTATTTCATTTGCCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCCGCTGCGGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCACGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGCATATTAGACAAGATTATCTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGTTTCCGATCAGATGCAGCTGCGAAGAATCCATCCGCCGTGTTGGAACCGCCTAAAGAGGATGATTATGATTTTCTGGCGAAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTGACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACCGTCGTTCAAAAGTGCCAAGAAACCAAGGCAAGTAATATGGCTATTACTAGCACTAGAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCGCTTCTGGACGACGACGCTTTAATGTCTATGACATTTGATTGA 3312 42.48 MHLVFGFVKLTTVLMSSFMADTAYVHADIDQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPTSASYSSSYNQAASENADSPSPTSPLTPFCEDGDTEDTGQATSRFRSFPTSPKMGNGLLMNKQDAGQSNFYFPHSSSNTSVPAVDYVSQVQKDVLGGNICGTNVTDSQKTLSSASWEEILQHCTTGFQTVPSHVLSSLIEPVSSGIVVGQENSISGKPSTSNSAITEDFGSSLTMNSNWQVSFEDNTSSFSKEYVDQFPELYSVYDIDSRLTEQKSHNATFGSGHELSCAHPGIVNEEILPNNLELQFKEGESYSAMRLSSENDTSKEGTVGYSLSLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDNSSLSPSLSEDQLFSIIEFSPKWTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEIREFDYLAGSAQDVDVTEVYTAGATEELYLHMRLERLLSHRSSNPPNNLSEGALEKRNLIRELISIKEEEDCYGEEPNSHNVQIQHQNKEFLFVKLMKEKVYSWLIRKVIEGGKGPHILDDEGQGLIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAAFCGRELTVGTLITLNAAPGLLADPSPENPLGIPPSELASMNGHKGIAGFLAESSLTSYIESISMGETVKDGVLDVSKRKPVHTVSERRATPISDGFMPADLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECSPDELGSSDDTAISFAKARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDAAAKNPSAVLEPPKEDDYDFLAKGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCQETKASNMAITSTREEIIEGDDMIDIDSLLDDDALMSMTFD 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1981956 1993993 - Carg24509-RA Car19g00205 167172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00205 1103 MobiDBLite consensus disorder prediction 161 234 - -
Car19g00205 1103 MobiDBLite consensus disorder prediction 161 202 - -
Car19g00205 1103 MobiDBLite consensus disorder prediction 214 234 - -
Car19g00205 1103 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Car19g00205 1103 Pfam IQ calmodulin-binding motif 952 971 IPR000048 GO:0005515
Car19g00205 1103 Pfam IQ calmodulin-binding motif 928 947 IPR000048 GO:0005515
Car19g00205 1103 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Car19g00205 1103 ProSiteProfiles IQ motif profile. 927 956 IPR000048 GO:0005515
Car19g00205 1103 ProSiteProfiles IQ motif profile. 950 974 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g01328 Car-Chr17:9946059 Car19g00205 Car-Chr19:1981956 4.05E-46 dispersed
Car14g01381 Car-Chr14:11622439 Car19g00205 Car-Chr19:1981956 3.80E-61 transposed
Car16g00743 Car-Chr16:4680164 Car19g00205 Car-Chr19:1981956 1.41E-61 transposed
Car11g01186 Car-Chr11:9603351 Car19g00205 Car-Chr19:1981956 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5256 PF03859 CG-1 9.20E-51 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00205 K21596 - csv:101203707 1768.82