Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00213 ATGGCGATATCGGGTTATAGTCCAATGCTCGTTCTCGCTATCTCGATAGCGGTTGTGCTACTCACCTTCACGACCCCGGTCGTGCATGGCCAAGGCACTCGCTTAGGTTTCTACTCCAACTCTTGCCCTCAAGCCGAGTCCATCGTTGCATCTACCGTTCGATCTCATTTCCAATCCGATCCATCGATCGCACCTGGGTTGTTGAGAATGCACTTCCATGATTGCTTTGTTCGAGGTTGTGATGCTTCTGTACTCCTATCTGGCTCTAATAGCGAGAGGACTTCACCTCCGAACCTTTCATTAAAAGGGTTTGAGGTGATTGACGATGCCAAGACGCAGCTTGAAGCTGCTTGTCCTGGTGTTGTATCTTGTGCCGATATTCTTGCGCTCGCGGCTCGTGACTCGGTGGTTATGACAAGTGGATTGCGTTGGGGTGTGCCCACAGGACGAAGGGATGGCACGGTTTCAGTGGCTTCAGAAGCTAACGATTTACCTGGATTTACTGACTCCATTGATGTTCAAAAGAAGAAATTCAGCGATAAGGGTCTCAACACTCAAGATCTTGTTACTCTCGTGGGTGGACACACCATTGGCACCACACAATGCCAGTTTTTCAGCTACAGGCTCTTCAACTTCACTTCAAATGGTCCAGATTCAAGCATCGACCCAGCATTCGTGAGCCAATTGCAAGCCCTTTGCCCACAGAACGGCGACGGCAGCCGCAGGGTTGGGTTGGACAATGGCAGCCCCAACAGGTTCGACACATCCTTCTTCTCAAACTTAAGGAATGGACGTGGGATCTTGGAGTCCGATCAAAAGCTATGGACCGATGCCTCCACTCGCACTTTTGTGCAACGCTTTCTGGGTTTGAGAGGGCTGTTGGGTCTGACCTTCAACGCTGAGTTTGGGAAATCCATGGTTAAGATGGGTAATATTGAAGTTAAAACTGGTACTCAGGGAGAGATTCGTAAAGTTTGTTCTGTAGTTAACTAA 993 49.24 MAISGYSPMLVLAISIAVVLLTFTTPVVHGQGTRLGFYSNSCPQAESIVASTVRSHFQSDPSIAPGLLRMHFHDCFVRGCDASVLLSGSNSERTSPPNLSLKGFEVIDDAKTQLEAACPGVVSCADILALAARDSVVMTSGLRWGVPTGRRDGTVSVASEANDLPGFTDSIDVQKKKFSDKGLNTQDLVTLVGGHTIGTTQCQFFSYRLFNFTSNGPDSSIDPAFVSQLQALCPQNGDGSRRVGLDNGSPNRFDTSFFSNLRNGRGILESDQKLWTDASTRTFVQRFLGLRGLLGLTFNAEFGKSMVKMGNIEVKTGTQGEIRKVCSVVN 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2057936 2060551 - Carg24501-RA Car19g00213 167180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00213 330 PRINTS Plant peroxidase signature 42 61 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 66 86 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 SUPERFAMILY Heme-dependent peroxidases 34 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Car19g00213 330 ProSiteProfiles Plant heme peroxidase family profile. 32 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PANTHER PEROXIDASE 17 328 - -
Car19g00213 330 Gene3D - 37 330 - -
Car19g00213 330 Gene3D Peroxidase, domain 2 165 309 - -
Car19g00213 330 PANTHER PEROXIDASE 25-RELATED 17 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 CDD secretory_peroxidase 34 329 IPR033905 GO:0004601|GO:0042744
Car19g00213 330 ProSitePatterns Peroxidases active site signature. 64 75 IPR019794 GO:0004601
Car19g00213 330 PRINTS Haem peroxidase superfamily signature 64 78 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Car19g00213 330 Pfam Peroxidase 49 287 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00511 Car-Chr10:2562428 Car19g00213 Car-Chr19:2057936 7.19E-128 dispersed
Car17g00955 Car-Chr17:7759698 Car19g00213 Car-Chr19:2057936 4.94E-85 dispersed
Car19g00213 Car-Chr19:2057936 Car19g00225 Car-Chr19:2224769 1.50E-97 dispersed
Car20g00522 Car-Chr20:2881603 Car19g00213 Car-Chr19:2057936 1.50E-61 dispersed
Car19g00212 Car-Chr19:2050965 Car19g00213 Car-Chr19:2057936 9.88E-07 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00213 K00430 - csv:101217567 541.962