Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00231 ATGGCAGACGGTGAAGATATCCAACCTCTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCGGGCGATGACGCTCCGAGGGCTGTGTTTCCCAGTATTGTCGGGCGACCACGTCACACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGTGATGAAGCTCAATCCAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACGTTCTACAACGAGCTTCGTGTTGCTCCGGAAGAGCATCCGATACTTCTTACCGAAGCACCACTTAACCCGAAGGCAAACAGGGAGAAGATGACGCAGATCATGTTCGAAACCTTCGACGTTCCTGCTATGTATGTTGCTATCCAGGCCGTTTTATCTCTCTATGCTAGCGGTCGAACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACAGTGCCAATATACGAGGGGTTTTCGCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTAACGGATGCATTGATGAAAATCCTTACCGAAAGAGGTTACATGTTCACGACAACAGCCGAGCGAGAAATTGTCCGTGACGTGAAGGAGAAGCTTGCATATGTGGCTCTTGATTACGAACAAGAACTTGAGACAGCCAGGACTAGTTCAGCCATCGAAAAAAGCTACGAACTACCAGACGGGCAGGTGATTACAATAGGAGCCGAGAGATTCCGTTGCCCGGAAGTACTTTTCCAGCCATCGCTGATCGGCATGGAATCACCCGGTATCCACGAAACCACATACAACTCAATCATGAAGTGTGATGTTGATATCAGGAAAGACTTGTACGGTAACATCGTACTCAGTGGTGGTACGACAATGTTCCCCGGCATTGCCGATCGTATGAGCAAAGAAATCACCGCTCTCGCTCCGAGCAGCATGAAGATTAAGGTCGTCGCACCTCCAGAAAGAAAGTACAGTGTTTGGATTGGAGGATCCATCCTAGCATCCCTCAGTACCTTCCAACAGATGTGGATCACGAAGGCTGAATACGACGAGTCGGGTCCGGCTATAGTTCACAGGAAATGCTTCTGA 1134 48.77 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2313086 2316014 - Carg24584-RA Car19g00231 167198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00231 377 PANTHER ACTIN-2-LIKE 1 376 - -
Car19g00231 377 PANTHER ACTIN 1 376 IPR004000 -
Car19g00231 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Car19g00231 377 Gene3D - 10 371 - -
Car19g00231 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Car19g00231 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Car19g00231 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Car19g00231 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Car19g00231 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Car19g00231 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Car19g00231 377 Gene3D - 140 340 - -
Car19g00231 377 SMART actin_3 7 377 IPR004000 -
Car19g00231 377 Pfam Actin 5 377 IPR004000 -
Car19g00231 377 PRINTS Actin signature 28 37 IPR004000 -
Car19g00231 377 PRINTS Actin signature 51 62 IPR004000 -
Car19g00231 377 PRINTS Actin signature 63 85 IPR004000 -
Car19g00231 377 PRINTS Actin signature 117 130 IPR004000 -
Car19g00231 377 PRINTS Actin signature 142 161 IPR004000 -
Car19g00231 377 PRINTS Actin signature 238 254 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01199 Car-Chr5:11350506 Car19g00231 Car-Chr19:2313086 8.02E-51 dispersed
Car19g00231 Car-Chr19:2313086 Car20g00933 Car-Chr20:10188237 0 dispersed
Car10g00229 Car-Chr10:1086705 Car19g00231 Car-Chr19:2313086 1.97E-84 transposed
Car11g01209 Car-Chr11:9827252 Car19g00231 Car-Chr19:2313086 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00231 K10355 - csv:101214459 755.362