Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00234 ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTCGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAACGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAGCAATGA 759 49.93 MDQSERSQHQQQSQQPAGGVGGAGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQQQQ 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2355197 2355955 - Carg24587-RA Car19g00234 167201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00234 252 MobiDBLite consensus disorder prediction 226 252 - -
Car19g00234 252 MobiDBLite consensus disorder prediction 1 32 - -
Car19g00234 252 Pfam Core histone H2A/H2B/H3/H4 67 156 IPR007125 GO:0003677
Car19g00234 252 MobiDBLite consensus disorder prediction 1 18 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00234 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101213813 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01382 Car-Chr4:8009972 Car19g00234 Car-Chr19:2355197 4.53E-12 dispersed
Car10g00938 Car-Chr10:7487376 Car19g00234 Car-Chr19:2355197 9.32E-76 dispersed
Car11g00029 Car-Chr11:135980 Car19g00234 Car-Chr19:2355197 5.64E-69 dispersed
Car19g00234 Car-Chr19:2355197 Car20g00114 Car-Chr20:644347 3.18E-10 dispersed
Car16g00529 Car-Chr16:3359685 Car19g00234 Car-Chr19:2355197 6.95E-31 transposed
Car11g01211 Car-Chr11:9853090 Car19g00234 Car-Chr19:2355197 6.11E-135 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car10g00047 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 5.3e-88 321.2
Car11g00029 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 3.4e-87 318.5
Car10g00938 . 74 242 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.5 3.8e-54 208.8
Car19g00234 . 73 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.4 1.6e-52 203.4
Car11g01211 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 8.0e-52 201.1
Car10g00938 . 1 242 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.1 6.5e-54 208.0
Car11g01211 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 2.1e-49 193.0
Car19g00234 . 33 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.8 2.8e-49 192.6
Car10g00047 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 8.7e-43 171.0
Car11g00029 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.5e-42 169.5
Car10g00938 . 23 242 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 4.8e-59 224.9
Car19g00234 . 33 214 CCAAT-HAP5 Transcription Factor Family AT1G54830 62.3 9.7e-52 200.7
Car10g00047 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.2e-51 199.5
Car11g01211 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 2.8e-51 199.1
Car11g00029 . 39 197 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.1e-50 197.2
Car10g00047 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.9 5.7e-38 154.8
Car11g00029 . 39 199 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.0 9.7e-38 154.1
Car10g00047 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 2.5e-80 295.8
Car11g00029 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 9.7e-80 293.9
Car10g00938 . 74 242 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.9 1.8e-49 193.4
Car19g00234 . 73 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.3 2.3e-49 193.0
Car11g01211 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 5.2e-49 191.8
Car11g01211 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 1.2e-64 243.4
Car19g00234 . 36 203 CCAAT-HAP5 Transcription Factor Family AT1G56170 76.9 5.6e-62 234.6
Car10g00938 . 48 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 68.0 2.2e-50 196.1
Car10g00047 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Car11g00029 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.9e-50 194.9
Car04g01382 . 1 280 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.5 6.5e-59 224.9
Car05g00364 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.0 2.8e-38 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5259 PF00125 Histone 8.10E-18 CL0012 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00234 Car_Chr19 FPKM 171.623398 186.708267 18.334524 18.325054 27.75606 30.487152 28.033892 0.194332 0.235558 0.133554