Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car19g00234 | ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGTGGGCGGTGCGGGCGGTGCGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCCGGAACACCCGCCATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAGCACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTCGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGACCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCTCGGAATCACTAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGGAAGCAATTGGATCAAGCGAACGTGTACGGTGCCACTGCTCAACAGCCACGACCACCTATGCCGTTCATGCCATGGCCGCACACTCAACCTCAGCAGCAGCAGCAGCAGCAGCAATGA | 759 | 49.93 | MDQSERSQHQQQSQQPAGGVGGAGGAGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQPRPPMPFMPWPHTQPQQQQQQQQ | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 2355197 | 2355955 | - | Carg24587-RA | Car19g00234 | 167201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car19g00234 | 252 | MobiDBLite | consensus disorder prediction | 226 | 252 | - | - | |
| Car19g00234 | 252 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Car19g00234 | 252 | Pfam | Core histone H2A/H2B/H3/H4 | 67 | 156 | IPR007125 | GO:0003677 | |
| Car19g00234 | 252 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g01382 | Car-Chr4:8009972 | Car19g00234 | Car-Chr19:2355197 | 4.53E-12 | dispersed | |
| Car10g00938 | Car-Chr10:7487376 | Car19g00234 | Car-Chr19:2355197 | 9.32E-76 | dispersed | |
| Car11g00029 | Car-Chr11:135980 | Car19g00234 | Car-Chr19:2355197 | 5.64E-69 | dispersed | |
| Car19g00234 | Car-Chr19:2355197 | Car20g00114 | Car-Chr20:644347 | 3.18E-10 | dispersed | |
| Car16g00529 | Car-Chr16:3359685 | Car19g00234 | Car-Chr19:2355197 | 6.95E-31 | transposed | |
| Car11g01211 | Car-Chr11:9853090 | Car19g00234 | Car-Chr19:2355197 | 6.11E-135 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 5259 | PF00125 | Histone | 8.10E-18 | CL0012 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car19g00234 | K08066 | - | csv:101213813 | 365.155 |