Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00236 ATGGAGAATATAACCGCGCAATTAAAAAGGGGAATATCGCGGCAATTCTCCACCGGCTCCTTACGCCGGAGCCTCAGTCGCCAATTCTCCAGGCAGTCGTCTCTTGATCCGAGGAGGAATAATATGAGATTTAGCTTTGGGAGACAGTCTTCTTTGGACCCTATTCGGCGTTGTCCTGATGAGGAAAATGAACTTTCTGTGCCCGAGAATTTGGACTCCACGATGCAGCTTCTTTTCATGGCTTGCCGTGGCGATGTTAGAGGCGTTCAGGATTTGCTTAATGATGGTACCGATGTTAATAGTATCGATTTGGATGGTCGCACCGCTTTGCATATTGCTGCTTGTGAAGGCCATGCTGAGAAATCGAGGAAGACACCAATGACAGTTGCAAATCCTAGGGAAGTTCCTGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGGGTGATGTTTTTACTTGTATATCTTTGCAGGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTGTCTGTGAAAATTCTTGATAGAGATTGTTATTCTAACCCGGATTCTATAAACGCATTTAAACACGAGTTGACATTACTCGAAAAGGTCCGACATCCCAACGTAGTTCAGTTTGTCGGCGCTGTTACCCAGAATTTGCCAATGATGATCGTTTCCGAATACCATCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCGAAAGCCTTAAGATTCGCTCTTGATATCGCTAGGCAAGTTCTGGGAATGAACTATCTTCATGAATGCAAACCCGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACTACTCAAAGTTGCTGGCTTTGGCTTGATAAGATTGTCAAAATTGTCAGCTGACAAAGCAAAACTAGCTCACCCAGTGGTTATTGACCATTCAAACATGTACTTAGCACCCGAAATTTACAGAGATGAAATATTTGACAGAAGCGTTGATGCATTTTCGTTCGGTCTAATTTTATACGAGATGGTTGAGGGTATTCAGCCACTCCATCCCAGGCCTCCAGAAGAGGCTGCTAAAGCTATTTGTGCAGAAGGAAAGAGACCTCCTTTTAAGATCAAATTGAAAAGTTATCCACCTGATCTAAAAGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTTATGAGGCCTACTTTCTCTGAAATAATTTTGCCAACTGCTCAAAACATGGATGGAAATAAGAAGGTAGAGGAACTCAACTCACTGTCTTCAGAAGTGGGCAAAGTGATAATGAATGAAGAACAATTCTCATAA 1332 42.19 MENITAQLKRGISRQFSTGSLRRSLSRQFSRQSSLDPRRNNMRFSFGRQSSLDPIRRCPDEENELSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEKSRKTPMTVANPREVPEYELNPLELQIRRGDVFTCISLQGTYQVAKWNGTKVSVKILDRDCYSNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARQVLGMNYLHECKPDPIIHCDLKPKNILLDNGGLLKVAGFGLIRLSKLSADKAKLAHPVVIDHSNMYLAPEIYRDEIFDRSVDAFSFGLILYEMVEGIQPLHPRPPEEAAKAICAEGKRPPFKIKLKSYPPDLKELIEECWDPEPVMRPTFSEIILPTAQNMDGNKKVEELNSLSSEVGKVIMNEEQFS 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2383166 2388363 + Carg24589-RA Car19g00236 167203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00236 443 ProSiteProfiles Protein kinase domain profile. 138 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00236 443 MobiDBLite consensus disorder prediction 27 46 - -
Car19g00236 443 Pfam Ankyrin repeats (many copies) 74 114 IPR002110 GO:0005515
Car19g00236 443 Pfam Protein tyrosine and serine/threonine kinase 160 409 IPR001245 GO:0004672|GO:0006468
Car19g00236 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01213 Car-Chr11:9864531 Car19g00236 Car-Chr19:2383166 1.55E-30 dispersed
Car19g00236 Car-Chr19:2383166 Car20g00218 Car-Chr20:1256883 3.16E-89 dispersed
Car20g00096 Car-Chr20:520648 Car19g00236 Car-Chr19:2383166 7.46E-15 dispersed
Car19g00236 Car-Chr19:2383166 Car18g00413 Car-Chr18:2588834 2.67E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89556 PF07714 PK_Tyr_Ser-Thr 1.50E-45 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00236 - - csv:101213574 721.85