Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00276 ATGTCAATCAAGGCCTCGTTTAGCAATGTAGCGAATGTGTTTCTCGACTGGGATGATGATCATAACCACGATTTCTGTTCGTGGCGTGGAGTTTTCTGCGACAATGTTACCCTATCAGTTGCTGCTTTGAACTTATCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGTAATTTACAGTCAATTGATTTTCAAGGGAATAAACTGTCTGGACAAATCCCTGATGAGATCGGTAACTGTGGTTTTCTTGTTCATTTGGACTTGTCTGATAATTTGCTCTATGGAGACATCCCCTTCACTGTTTCAAAGCTTAAGAAGCTCGAGTTCCTAAATCTGAAGACGAACCAGTTGACCGGTCCGATCCCTTCTACCCTTACCCAGCTTCCTAATCTGAAAACTCTTGATCTTGCACGAAACCAGCTTACTGGAGAGATACCAAGATTAATCTATTGGAATGAAGTTCTGCAGTATCTTGGATTACGTGGGAACGTTCTGACAGGATCGTTGTCGTCTGATATGTGTCAATTGACTGGCTTGTGGTACTTTGATGTAAGAGGCAACAATCTGACTGGCACGATACCGGATAGCATAGGAAACTGCACCAGTTTTGAAATTCTGGATATATCCTACAACCAAATCTCGGGGGAGATTCCATACAATATCGGATTTCTTCAAGTTGCCACTTTATCATTACAGGGAAATAGGTTGAGTGGTAGGATTCCCGATGTCATTGGATTGATGCAGGCGCTTGCCGTCCTGGATCTGAGTGAGAACGAACTCGAAGGACCGATACCGCCAATACTTGGGAACTTGTCTTACACAGGAAAATTGTACTTACATGGAAACAAGCTGACCGGGCCAATTCCTCCTGAGCTGGGAAATATGTCCAAGCTTAGCTACTTGCAACTAAATGACAATCATTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTGAATCTTGCTAATAATGATCTAGAAGGGCCAATCCCTCACAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACCGTCTTAACGGATCAATCCCTCTCGGTTTCCAAGATCTGGAGAGCTTGACATATTTGAATCTTTCAGCAAACAACTTCAATGGTTGGATTCCTGTTGAGCTCGGACGCATCGTGAACCTCGATACATTGGATCTGTCTCGCAATTACTTCTCGGGTCCGGTTCCTACTTCTGTTGGCGATTTGGAGCACCTTCTGAGCCTCAATTTGAGCTATAATAGACTTGTCGGGTCAATGCCAGCAGAATTTGGGAATCTACGAAGTGTTCAGACTATTGATATGTCATTCAACAACTTCTCTGGTAGCATACCCATGGAGTTGGGTCAACTACAAAATATTATCTCATTAATTTTGAACAACAACCATTTGCAAGGGAAGATACCTGATCAGCTGACAAATTGTTTCAGTTTAGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTTGAACAAAATAGCTTTCTCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGATCGATTTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGGCAGCGGTTGTTTGTATGACGTTTGGATTCATAATGTTGTTGTTTATGGTTATAATTGCTGTGTACAAGTCGAATCCATCGAAGCAATTGATGAAGCGTTCTAGCACGACTGGGCAAGGTCCTCCAAGTCTTGTAGTACTTCATATGGATATGGCTATTCACACGTTCGAGGACATTATGAGAGTGACCGAGAATCTAAGCGAGAAGTACATTATCGGTTATGGAGCTTCGAGCACTGTGTACAAATGTTTACTGAAGAATTCCCGACCTATTGCAGTTAAGCGACTTTACAATCAGTATGCACACGATTTAAGGGAGTTCGAGACCGAACTTGAAACTGTTGGTAGTATTAGACATAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGGACCAGGCAAGGTTAAACTGGATTGGGACGCACGTCTGAAGATCGCGGTTGGAGCTGCACAAGGGCTTGCATATCTTCACCATGATTGTAGCCCGCGAATCGTTCACCGGGACGTGAAGTCTTCGAATATTCTACTGGATGAAAATTTCGAGGCCCATCTCTCTGATTTTGGGATAGCCAAATGTATCCCAACTGGAAAAACATACACGTCTACTAGCGTGCTTGGAACGATTGGCTACATTGATCCAGAGTATGCTCGAACCTCCCGGCTTAATGAGAAGTCCGATGTTTATAGCTTCGGCATTGTTCTTCTGGAACTACTGACTGGGAAGAAGGCTGTGGATGACGAGTCCAATTTGCATCAACTG 2478 43.14 MSIKASFSNVANVFLDWDDDHNHDFCSWRGVFCDNVTLSVAALNLSNLNLGGEISPSIGDLSNLQSIDFQGNKLSGQIPDEIGNCGFLVHLDLSDNLLYGDIPFTVSKLKKLEFLNLKTNQLTGPIPSTLTQLPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNVLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGRIPDVIGLMQALAVLDLSENELEGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNHLVGTIPSELGKLDQLFELNLANNDLEGPIPHNISSCTALNQFNVHGNRLNGSIPLGFQDLESLTYLNLSANNFNGWIPVELGRIVNLDTLDLSRNYFSGPVPTSVGDLEHLLSLNLSYNRLVGSMPAEFGNLRSVQTIDMSFNNFSGSIPMELGQLQNIISLILNNNHLQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEQNSFLGNPLLCGNWLGSICGPYMEKSRAMLSRAAVVCMTFGFIMLLFMVIIAVYKSNPSKQLMKRSSTTGQGPPSLVVLHMDMAIHTFEDIMRVTENLSEKYIIGYGASSTVYKCLLKNSRPIAVKRLYNQYAHDLREFETELETVGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHGPGKVKLDWDARLKIAVGAAQGLAYLHHDCSPRIVHRDVKSSNILLDENFEAHLSDFGIAKCIPTGKTYTSTSVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3435855 3440712 - Carg27462-RA Car19g00276 167243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00276 826 Pfam Leucine rich repeat N-terminal domain 2 34 IPR013210 -
Car19g00276 826 Pfam Protein kinase domain 620 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00276 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Car19g00276 826 ProSiteProfiles Protein kinase domain profile. 617 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00276 826 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Car19g00276 826 ProSitePatterns Protein kinases ATP-binding region signature. 623 645 IPR017441 GO:0005524
Car19g00276 826 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515
Car19g00276 826 Pfam Leucine rich repeat 398 457 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00793 Car-Chr2:5775093 Car19g00276 Car-Chr19:3435855 0 dispersed
Car19g00276 Car-Chr19:3435855 Car14g01670 Car-Chr14:13300897 7.72E-159 dispersed
Car19g00276 Car-Chr19:3435855 Car09g00316 Car-Chr9:1754183 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89557 PF00069 Pkinase 2.80E-39 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00276 K20718 - csv:101213139 1510.35