Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00278 ATGCCCTTGATTTGTTCGTCGAACATGTTGAAGAACACTCGTAACAGCCCTGATTGGAACTCGGAATTTGGGTACGTTGAGACCGATCCGACATGTCGTTACGGCCGTTTTGAAGAAGTTTTGGGGAAAGGGGCTATGAAGACAGTGTACAAAGCCATTGATGAGTTTCTTGGAATTGAGGTGGCTTGGAGTCAGGTGAAGCTCAATGAAGTTCTCCGGTCACCGGAGGATTTGCAGCGGTTGTATTCGGAAGTTCATCTACTTAGTACGCTTAAGCATGAATCGATCATGCGATTCTACACCTCTTGGATCGATGTCGAACGCAAAACGTTCAACTTCATTACTGAATTGTTTACTTCTGGAACGCTTAGAGAATATGTAAAGAAGTATAGGCGAGTCGATATCAGAGCCATTAAGAGCTGGGCGCGCCAGATTCTACGCGGGCTCGTTTATTTGCATGAACACGACCCTCCGATAATACACAGAGATTTGAAGTGCGATAATATCTTTGTAAACGGCCATCTTGGACAAGTCAAGATTGGTGACTTGGGGCTTGCAGCTATACTCCATGGTTCCAGATCTGCTCACAGTGTTATAGGCACACCGGAGTTTATGGCACCGGAATTATACGAGGAAGATTACAACGAGCTGGTTGATGTCTACTCGTTCGGCATGTGTGTTCTGGAGATGCTTACTTCCGAGTATCCGTATAGCGAGTGTTCTAATCCTGCACAGATTTACAAGAAAGTCACGTCGGGGAAGCTGCCAGCAGCATTGTACAAGATTCACGACGCGGAAGCACAGAGATTTATTAAGAAATGTTTGGTACCGGTATCGATGAGGGCGTCTGCTAAGGAACTCTTGGCCGATCCGTTTTTGAAGGTCGATGGAGATAGATCTTTGTCGATCGAGAGGAATCAAAACCAGAAGCCATTTCTAAATGCCAAAGAGATGGAGAAATTGCACTTAGGTGAAGGTTTGAACAGGACGAACATGACGATCACCGGGAAGCTTAACCCCGAAGACGATACGCTCTTTCTTAGAGTTCAGATTGCTGATAAAGATGGCTCTCTTAGGAACATATACTTCCCCTTCGACATAGTTAACGACACAGCGTTAGACGTAGCAATGGAGATGGTGAAAGAATTGGAGATCTCCGATTGGGAGCCGTTCGAAATAGCGGACATGATCGAAGGAGAGATATCGGCTCTGGTTCCGAACTGGAATAGAAGCGAGTTACCCAACCATAGACTCGGCTTCAGCTATTCAGAAGAAGACGATGATGCAGCTCATCGTACTCTCCGCTCCATCTCCTCGTCGTCCCGAGCAACAACTTTGAGTTTCATCACCTCTCCTAAAACAAATCAAAACATATCAAATGGTTTAAGTTGGTTCCCAGATGAAACGCTCGACGATAGCAGCTCACAGTGCTCATCGGCGTCGGGGAAATACTCGAACTTGAATTACGTCAGCAGCGACGAGTACGAGACCGGTATGAGTTCAGTCCGGGTAGATCAACATAACAACATCAATAAGATTCAAAACTCCTCAAGATTTTGTCCTGTTGAGAGCCGCAAAAACAAGGACTTCATGGCTGGGCTTCTATACAAGCAGAGCCAATGTGCGGTAGCAGGGTCATCACAATTAGCTACCTCTGGTCGCAAAGACAAGAGGGGAACGGACGGCCGGACATTAACAAGGAACAGGTCACTAGTAGATGTACATAGCCAATTGCTGCATCGTTCGTTGGTCGAGGAAGTGAATCGAAGACGGTTATTCAAGACGGTTGGAGCGGTCGAAAGCATCGGGTTTCAAGCACCTTGTGAGGTTTCTTCCAGCAAAAGGGTTTCGAGTAGGCAACCGATCGGGAACCGAAGTAGCGATGTAGCGAGAACGAGGAGAAACGACGATATTAGGTGGGAAGTTGTTGGAAGGAGAACATGA 1944 46.6 MPLICSSNMLKNTRNSPDWNSEFGYVETDPTCRYGRFEEVLGKGAMKTVYKAIDEFLGIEVAWSQVKLNEVLRSPEDLQRLYSEVHLLSTLKHESIMRFYTSWIDVERKTFNFITELFTSGTLREYVKKYRRVDIRAIKSWARQILRGLVYLHEHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSRSAHSVIGTPEFMAPELYEEDYNELVDVYSFGMCVLEMLTSEYPYSECSNPAQIYKKVTSGKLPAALYKIHDAEAQRFIKKCLVPVSMRASAKELLADPFLKVDGDRSLSIERNQNQKPFLNAKEMEKLHLGEGLNRTNMTITGKLNPEDDTLFLRVQIADKDGSLRNIYFPFDIVNDTALDVAMEMVKELEISDWEPFEIADMIEGEISALVPNWNRSELPNHRLGFSYSEEDDDAAHRTLRSISSSSRATTLSFITSPKTNQNISNGLSWFPDETLDDSSSQCSSASGKYSNLNYVSSDEYETGMSSVRVDQHNNINKIQNSSRFCPVESRKNKDFMAGLLYKQSQCAVAGSSQLATSGRKDKRGTDGRTLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVESIGFQAPCEVSSSKRVSSRQPIGNRSSDVARTRRNDDIRWEVVGRRT 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3585697 3588764 + Carg27808-RA Car19g00278 167245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00278 647 ProSiteProfiles Protein kinase domain profile. 35 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00278 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Car19g00278 647 Pfam Protein kinase domain 38 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00258 Car-Chr3:3787593 Car19g00278 Car-Chr19:3585697 0 dispersed
Car18g00187 Car-Chr18:1022231 Car19g00278 Car-Chr19:3585697 1.05E-163 dispersed
Car20g00273 Car-Chr20:1588862 Car19g00278 Car-Chr19:3585697 5.94E-56 dispersed
Car19g00278 Car-Chr19:3585697 Car02g00510 Car-Chr2:3991606 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89558 PF00069 Pkinase 7.50E-48 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00278 K08867 - csv:101203757 1145.95