Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00287 ATGGAGATCTCAGTTAAATGTGCCATTTTTGGCTGCCTCTTGCTCGTGCTCTTGCCTATGCTATGCTCCTCCCAAGACAACTTTGTATACTCTAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGGACACCATCTGGGGCTTGTGGATTTGGTGACTTTGGAAGGACTGTGAATGATGGCAATGTTGCTGCAGTTTCTTATCTCTATAGGAATGGTTCTGGTTGTGGTGCATGCTACCAGGTTAGGTGCACTAATCCAACATATTGCAGTGATAGTGGAGCCTATGTAGTGGTGACTGACCATGGTGAAGGGGATTACACTGACTTTATCATGAGCCCACGAGCCTTTGCAAAATTGGCTCATCCAAACACAGCCTTTGAATTGTTCTCTTATGGTGTGGTTGATGTACAATTCAGAAGGGTTTCGTGCCAATACCCTAATTACAACACGGTCAAGTTCAAGGTTCATGAGCATAGTAGGTACCCGGACTACTTGGCGATTGTCATCATTTATGTCGGTGGCCAAAACGATATCACCGTCGTTGAATTGTGGCAGGAGGATTGCAATGAATGGAAGGGGATGAGGAGATCCCATGGAGCTGTTTGGGACATGGCAAACCCACCAAAAGGAGACATAAAATTGAGGTTTCAAGTGAGTGGAAGTGTGGGATATGGAAGGTGGGTGATGGTAACCAATGCTCTCCCAAGCTATTGGAAGGCAGGAATTGCTTATGATACTAACATTCACCTCTATTAA 759 45.32 MEISVKCAIFGCLLLVLLPMLCSSQDNFVYSRATYYGSPDCYGTPSGACGFGDFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPTYCSDSGAYVVVTDHGEGDYTDFIMSPRAFAKLAHPNTAFELFSYGVVDVQFRRVSCQYPNYNTVKFKVHEHSRYPDYLAIVIIYVGGQNDITVVELWQEDCNEWKGMRRSHGAVWDMANPPKGDIKLRFQVSGSVGYGRWVMVTNALPSYWKAGIAYDTNIHLY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4329932 4331791 + Carg25079-RA Car19g00287 167254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00287 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Car19g00287 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Car19g00287 252 Pfam Lytic transglycolase 66 139 IPR009009 -
Car19g00287 252 Pfam Expansin C-terminal domain 152 236 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00287 Car-Chr19:4329932 Car19g00316 Car-Chr19:4949367 1.48E-64 dispersed
Car11g01397 Car-Chr11:11408765 Car19g00287 Car-Chr19:4329932 2.10E-18 transposed
Car19g00287 Car-Chr19:4329932 Car02g01336 Car-Chr2:8837079 5.96E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00287 - - csv:101215548 458.759