Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00289 ATGCTAGCCAATATTTATGGTTCTCAAGCGACCCGGGCGCGTCGATGGAGAAGAAGTGTTATTCATCACATTGATCACTACTATGGCTTACCTCATGTCATATTGGTCTTCAGTAATTTGCCTGCAACGTCTCTATACACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACGAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAATAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGATGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTTAA 513 45.22 MLANIYGSQATRARRWRRSVIHHIDHYYGLPHVILVFSNLPATSLYTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTG 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4335425 4336167 - Carg25081-RA Car19g00289 167256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00289 170 MobiDBLite consensus disorder prediction 142 170 - -
Car19g00289 170 MobiDBLite consensus disorder prediction 139 170 - -
Car19g00289 170 Pfam GATA zinc finger 47 73 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00289 - - - cmax:111470531 253.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00289 Car-Chr19:4335425 Car01g00085 Car-Chr1:458684 2.28E-06 dispersed
Car19g00289 Car-Chr19:4335425 Car02g01335 Car-Chr2:8829645 3.30E-74 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00679 . 59 336 C2C2-Gata Transcription Factor Family AT5G66320 51.4 1.3e-63 240.7
Car02g01335 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.2 3.1e-133 472.6
Car16g01046 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.0 7.7e-132 468.0
Car05g00985 . 5 481 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.6e-124 443.7
Car19g00289 . 47 170 C2C2-Gata Transcription Factor Family AT4G17570 66.1 1.2e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5260 PF00320 GATA 2.40E-10 CL0167 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00289 Car_Chr19 FPKM 3.408663 2.629029 34.650181 33.49453 19.384369 24.402313 20.113617 10.907634 12.14179 11.025109