Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00342 ATGGACATCTCCTTGGCGGCAATGGACGACTCTGCAACCAGTCCCGTCAAGGCCTTGGCTTCGTTTCTAATTCGCCGCCACTCCGATCAGCTTCTTTCCATTGCTCATTCCCCTGATCCTAAGCTCCATTACCCTCTATTCGTGGAATTCGCAGAGCTGATGGACGACGATCCACCTCTTGCTCGTCTTGTTTTCTCCCATCCGACCGAGTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCGCATAAGATCACTTTGGGCGATTCGAAAGGTTGTATAAATGGAATTAAGAAAGATTTCATCCATGTTCGCATTAATGTCGCCGGATCCCCTCTGGAATGGCCTGAGACTTCTCCAAGTATTGGGTCTATCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGATCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATTTGCCGGAGATGCAAGCACAAGTTCCCAGTATATCCCGAGCTGGAAGCCAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGGCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGATCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGACGATGTTATTGTTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACATCAAAGATGTACGGTGTGACCTTGATCCAATGCTAATTGCTAATCATGTGAGAAGAACCAATGAACTGAAGGCAGAGGTTGACATCCCTGATGACATAATTATGAATTTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGTAGAAATGCTATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATGTATCTGGAACCAAAGTTCGAGGAGAATCTCATCTATTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAACTGAGCAACCGGGCTGTTATTACCACTGGATTAGGAAGCACTAGCGCTGGACTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGCTGGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGTATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTCGCAAAGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTATGACCCTGAACAACCTCTCTCTGTCAATACAACACTCTCCGGACCCTTATTGAGCAGATTTGATATCGTCCTTGTGCTTTTAGATACCAAAAATCCCGAATGGGATGCAGTTGTCTCATCACATATTCTCTCCGAGTGCCAACAAGAAAAGGGAAAGCGTGATAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACCTCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACCAAGGAGGCAGAACAAATTATTTCAAGATACTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGAACAACAGTCCGCATGCTCGAAAGTTTGATACGTTTAGCACAAGCACATGCACGGCTCATGTTTAGAAATGAGGTTACTCGGCTCGATGCCATTACGGCTATATTGTGCATCGAATCATCCATGACGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCACTCCAACTTTACCGAGAACCCAGATGAGGAATGTATCCTTCCTTCCTAA 1944 44.96 MDISLAAMDDSATSPVKALASFLIRRHSDQLLSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSHPTEYLRIFDDAAVWAHKITLGDSKGCINGIKKDFIHVRINVAGSPLEWPETSPSIGSIRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRRCKHKFPVYPELEARNSIQLPSFCPSQRAKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGDDVIVTGVLSAKWSPDIKDVRCDLDPMLIANHVRRTNELKAEVDIPDDIIMNFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDVSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPEQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSECQQEKGKRDNDLSSNWPLTMLRRYLQFVKGYFRPVLTKEAEQIISRYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSALVDSVGNALHSNFTENPDEECILPS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5283540 5310366 + Carg22822-RA Car19g00342 167309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00342 647 Pfam MCM OB domain 124 254 IPR033762 -
Car19g00342 647 Pfam MCM AAA-lid domain 536 617 IPR041562 -
Car19g00342 647 ProSiteProfiles MCM family domain profile. 310 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car19g00342 647 SMART AAA_5 352 501 IPR003593 -
Car19g00342 647 Pfam MCM P-loop domain 312 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car19g00342 647 CDD AAA 354 497 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00984 Car-Chr17:7900030 Car19g00342 Car-Chr19:5283540 4.57E-71 dispersed
Car19g00342 Car-Chr19:5283540 Car19g00528 Car-Chr19:6875084 5.96E-36 dispersed
Car19g00342 Car-Chr19:5283540 Car06g01490 Car-Chr6:10509629 1.41E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00342 K10738 - csv:101205171 1184.86