Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00344 ATGGATTTCCTCTCTTCCAGAAAGCTTCTCTCCGACGACGCCGACGACGACCTCAACAAATTCTGCCCTGAAGACTGCTTCGATCACCCTTCCGATTCTTGCTCCTCCGATTGCCTCGAAAAATGCCCTACACTCTGTTCTTACATCTCTACTTCAATCCCCCCGCCCGATTTTGACGATTTCAATCCCTCCTCCGCCGCCAAATCGCCGCATAAACTCTCCAATTTGGTTACCTTAACCATCGCTCTCCTCTCTTTTACCTTCCTCCTCGTCCTCTGCTACGCCGTCTACGCCCGTTTCTACTCCGCCCGCCGTAGACAGATCCGCCGCCTCGATTCCCCACCGCCCCCGACCCACCACCACCACCACCACAGCCCTGTTTTGGATCACCCCATTTGGTATATCCGTACCATCGGCCTCCCGCCAGCTGTTATCGACGCCATCGCCGTCTGCAAATTCAAATCCGGCGAGGGTTTGATCGACGGAACAGAGTGCTCTGTTTGTTTAAGCGAATTCGAAGAGGATGAAACTTTAAGACTCTTGCCAAAATGTAGCCACGCTTTTCATCTCCCCTGTATCGATACTTGGCTTCGATCCCACACCAATTGCCCCATGTGCCGCGCTCCCGTCGTAGCTCACTCCGCTCCACCGACACCGACACCGACACCGCCTCGGGCCGAAACCCAGATGGCGAATTTACAGGAGGAAGAAGAAAACGCCGCCAATTCAGGGGAAAATTCCACGAGAAACGAAGAACAAGATGAAACCCATTTAGAAAGTGACAATCAGGCGATGAGAAGATCGGTGTCTTTAGATTTGCCCTCTGCTCTTCAAATCAGCTCTGTTCTTGGTGTTGTTAATGAAAAAATGGATTGGGAAGGTGAATCGGAGCAGAGAAATGGGAATTGCTCGGAGAAATCAGAGGGGAGTATGAACAGGAATAGAGGCTTCTTAAATCAAAGTTTCAAAGCGATCCTGGTCTTCAATGAAGCCAGTGTTTCGAACTATTGCTCTCATGGAGCACTGAGGAGTGAATCTCTTGATGAATCAGTGAATTCTGAAGAAACCAATGACTTGAAGAGCAGAATATTTCGGCTCAGACTTCCCAAGCGAAGTGCTATCAACGTTATTCAGAGATGGACGAGTGAGGGCAATCAAGTTACGATCACTGAGCTCCGGAACATCTCCAAAGAACTCAGAAGGCTTCAGCGGTATAAGCACGCTCTTGAGATTTTAGAATGGATGGTGTCTCATAATGAAAACGAGTTATCCGATTCTGACTTTGCAATCCGCATTGACTTGATGACGAAAGTTTTCGGTATCGATGCTGCTGAACGATACTTTGAAGGTCTGCCAATCAACGCCAAAACTTGTGAGACTTATACTGCTCTCCTTCACTCATTTGCGGGGTCCAAATTGACTGAAAAGGCAGAAACTCTTTATGAAAAAATGAAGGAGTCAGGTATACCTCTCACTGCCCTTCCATTCAATGAGATGATGACTTTATACACATCGGTCGGTCAAGTAGAAAAGGTATCCTCGATTGTCGACGACCTGAAACAAAGCAAGGTTCATCCTGACATTTTCACGTATAATCTTTGGATCAGCTCTCTAGCTGCAACATTAAATATCGATGGCGTTAGACGGATTCTCGATGAGATGAATTGCAACCCCAATTCAAATGAAGTCTGGGTGCGATATATCAATCTCGTCAACATATACATTACATCAGCTCATCTACTGCATTCCGAGTCGAACTCCGTAGTCGAGTCTGAGAGTGGCATTACGCAACGAGAATGGATTACATACGACCTCCTCATTATCTTGTATGCTGGTATGGGAAACAAAGACAAAATTGATCAGATTTGGAGATCATTAAGGATGACAAGGCAAAAAATGACGAGCAGAAACTACATTTGCATTCTATCTTGTTACCTGATGCTTGATCACTTGAAGGAAATTGGTGAAGTTATTGATCAATGGAAACAATCAAGTAGTGGAGATTTTGATGTTTCTGCTTGTAACAGGCTTGTAAATGCGTTTGTTGAAGCTGGTTTCAAGGAGAAAGGCAACAGTTTTGTCACCATTTTGAAGAACTGTGAACCCACAGAAGCATAG 2118 46.03 MDFLSSRKLLSDDADDDLNKFCPEDCFDHPSDSCSSDCLEKCPTLCSYISTSIPPPDFDDFNPSSAAKSPHKLSNLVTLTIALLSFTFLLVLCYAVYARFYSARRRQIRRLDSPPPPTHHHHHHSPVLDHPIWYIRTIGLPPAVIDAIAVCKFKSGEGLIDGTECSVCLSEFEEDETLRLLPKCSHAFHLPCIDTWLRSHTNCPMCRAPVVAHSAPPTPTPTPPRAETQMANLQEEEENAANSGENSTRNEEQDETHLESDNQAMRRSVSLDLPSALQISSVLGVVNEKMDWEGESEQRNGNCSEKSEGSMNRNRGFLNQSFKAILVFNEASVSNYCSHGALRSESLDESVNSEETNDLKSRIFRLRLPKRSAINVIQRWTSEGNQVTITELRNISKELRRLQRYKHALEILEWMVSHNENELSDSDFAIRIDLMTKVFGIDAAERYFEGLPINAKTCETYTALLHSFAGSKLTEKAETLYEKMKESGIPLTALPFNEMMTLYTSVGQVEKVSSIVDDLKQSKVHPDIFTYNLWISSLAATLNIDGVRRILDEMNCNPNSNEVWVRYINLVNIYITSAHLLHSESNSVVESESGITQREWITYDLLIILYAGMGNKDKIDQIWRSLRMTRQKMTSRNYICILSCYLMLDHLKEIGEVIDQWKQSSSGDFDVSACNRLVNAFVEAGFKEKGNSFVTILKNCEPTEA 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5318670 5325527 + Carg22820-RA Car19g00344 167311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00344 705 Pfam Pentatricopeptide repeat domain 494 536 IPR002885 -
Car19g00344 705 MobiDBLite consensus disorder prediction 291 312 - -
Car19g00344 705 MobiDBLite consensus disorder prediction 235 262 - -
Car19g00344 705 MobiDBLite consensus disorder prediction 248 262 - -
Car19g00344 705 Pfam Ring finger domain 164 207 IPR001841 -
Car19g00344 705 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
Car19g00344 705 Pfam PPR repeat 460 489 IPR002885 -
Car19g00344 705 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01180 Car19g00344 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00753 Car-Chr3:6373285 Car19g00344 Car-Chr19:5318670 1.43E-45 dispersed
Car19g00188 Car-Chr19:1723937 Car19g00344 Car-Chr19:5318670 5.97E-37 dispersed
Car19g00775 Car-Chr19:8471389 Car19g00344 Car-Chr19:5318670 2.07E-42 dispersed
Car11g01180 Car-Chr11:9561590 Car19g00344 Car-Chr19:5318670 1.25E-110 wgd
Car19g00344 Car-Chr19:5318670 Car02g01377 Car-Chr2:9087864 4.77E-43 wgd
Car19g00344 Car-Chr19:5318670 Car04g00354 Car-Chr4:1995187 2.77E-45 wgd
Car19g00344 Car-Chr19:5318670 Car05g00472 Car-Chr5:2688736 1.93E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00344 - - csv:101204437 681.404