Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00348 ATGCCGTCAAAGGGGAAGAAGAACTCAAAGACACTCTCTAGATTATCAAACTCGAACCACTCTCAATCTCCAGTGTCACGATTGGCAATACCTCCTGCCTCCGAAGTTTGTGAAGATGATTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATAGGTAAATCTGCTTTTGTTGGAAGAGTTACTAATGCTTCAGTTCAATCTACTGGCTGCAAAGTTTGGGTTTCTGAATCTTCTATGGTTTCTTCTAGCTTCACCCAAGGGGCTATTGTCTCGATAGCACTTAGTTCCGTGGGAGATAACAGTTCCAAAGGCTTTCCTCTTTCCTCGTTAGCAGATGAATGTGGTAGGCACTTTGGGGTTGATTATGGAGATTCATTAATCCATGAAGCGGGAAATTACTTTGTTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTGCAATTATCAACAACCCTGTCGTTTACCTTGGGTTGCCCTACAATTGGTCGTGTTGTGTTTATCTTCCCATTAAAGACCCACGTATGCAATGATGCATTAAATGAAAATGGGAAATTGAAAAGCACAGAAGTTGAATCTCTGGGAATATACAATTGTAAGGAACTGTTCCTGGAGCTAGTTTCTTCAACCAATGTATCAAAAAAAGACAGCTTATTCTCTTCCTCAACTATTTATTCAAGGAAGGTTCATGGTCATAGTGAAAATGGTAATCTAGCATCCCCAAGCACCATGCTGTCTACATCTCCTAAATGTGATGATGCAGTATCAAATTTACTTGTAGAGAGGCCATGCGCTCATTCACTTATTAAGGAGGCCTTAGGAGATGATAGTGTTAGAAAAACTCTACAGACGATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGGGGTAATCTTGTAACTTTCCCAGTACTTTCAGATCTTTGTACATTCCATGTGAGGGGTGGTAAAGGACTGTCGGGATATGATGACTCGTATGATTCTATGCACAGTGGAAGCGACGATCATTTTCAACATTTTTCATCAAATGAATATGTGGATTATGCTTTCAGTATAGACCAGTTGACAAAAGTATTTATAAATGTTCAATCAACTACAGTCTCAGAGACAGTGCAAGAAAGAGTTTTATCAAAAGTGGATCCTCAAAATCTAAATATGAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCTAAAGAATATTCAGTTTTAAAGGACATTATAATTGCCTCATCATTAAATAACACCGTGTCAAGCCTTGGTTTACGAACCACAAAGGGTGTACTTCTTCATGGTCCTCCTGGTACGGGAAAAACTTCTTTGGCTCAATTATCTGCTCACGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGGTGTTTTTGAGGAGGCAAGCCAAGCTGCGCCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACTTTGCTTAATCTAATGGATGGGATCAACCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGGCCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTAGATATTCTACACACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTAGTGCAAGTTCAACATCTAGCTATGGTTACACATGGATTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAATCTGTATAAGGCAATATCATGAGTTTAAAGTTTCTACTGATTGCGTTAGTTCTGGTAGATCTGTTATAGCAGAGGAACAACATATGGTTACTAAGGTGGATAACGAAGCCAATGTCGATCATATAATTTCGGAACCTGTTCTCTCAAAAGATGCTAGAAGTATATCAGGCATATGCTCAAACTCAGCGCCTTTATCATTTTCTGAAGATACTCTTACATCTGAGTCTTTAGCATGTGTGTCCTCGAATGAAGTGGTTGCTGATAGTGAGGATATTTTTAACTCTTCTGAAATCAAGTGTAGATTGAAGGTTGCTTTTGAAGACTTTGAGATGGCTAGAATGAAAGTGCGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGATATTGGTGGACAAGGGGAGGTTAAGGTTCAATTGATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTCGACCTCCAACAGGAGTGTTAATGTTTGGACCTCCTGGATGTAGCAAAACCCTAATGGCACGTGCCGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAGATCTCTATTTGCTAAGGCAAGAGCTAATGCCCCATCAATCATATTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGGAAGGAAAGTGATGGGGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCCGCTACGAATCGGCCAGATAAGATTGATCCGGCCCTTCTAAGGCCAGGACGTTTTGATCGGTTGCTATATGTTGGGCCTCCAAATGAATCCGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGCACAAGGAAGTTGGCTTCTCTTACCCCAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAAGCAGCCTTATTTGCCCTTGAGGAAAACCTTGAGGCTTCAAAAATAAGTATGCAACATTTAGAAACTGCAGCTGGACATGTGAAGCCATCTGAAACTGAACCTTATCGAGAATTATCATCTAGGTTTGAAAGGCTTGTTTGTTCTAGCTCACAAGAAGACAATGTTCGGACGCGTTTTAATAACCTTGAGGGGAAGCCCGGAAGGGAAAGCACAAAGAGGACAATATCTGCTAGCGGTGGGCTTGAGCCGTTACAGTTTTATGCTGCATCAGAAATGGGTACGTACGGCGATTTATCTGAGAAAAAACTTAGAACTTACGAGTTGTGTCACACGTATAAGGTAGTGACCAGTATATATGAGAATGAATACGGTTGGTTTACGAATATTAGAGAGGGAGAGTTTGAAGTTGTAGAAGCCGTGGTAGCGCTTCAAATGAGCAGCTACAAATTGGCTGCTGGTGATTCATTTACACATTGTCTTCAAGCAATTGTTCTGTCATGGCAATCACTCAAGAACAAGACCATGTTTAAACAGCGGTACCTGAAGGATGAAGCTGCCATTTACAAATCCTGCTCTGAAGAGAGTAGTTTTCAGGAGCGAGATAGAACAGATCTGGAGGCTTATGAACTGCAGAGGGTTGAAGCACAAGTGCTGTGGGTGTACGATGGATGTTATGTTCTTTGGGCTGTTGCTTTCTTTGAAGGCTTGTGA 3618 41.6 MPSKGKKNSKTLSRLSNSNHSQSPVSRLAIPPASEVCEDDFLSSIEEASSKYPSLIGKSAFVGRVTNASVQSTGCKVWVSESSMVSSSFTQGAIVSIALSSVGDNSSKGFPLSSLADECGRHFGVDYGDSLIHEAGNYFVLARIFSSSKELNDGVQLSTTLSFTLGCPTIGRVVFIFPLKTHVCNDALNENGKLKSTEVESLGIYNCKELFLELVSSTNVSKKDSLFSSSTIYSRKVHGHSENGNLASPSTMLSTSPKCDDAVSNLLVERPCAHSLIKEALGDDSVRKTLQTIASNELYKRCLLRGNLVTFPVLSDLCTFHVRGGKGLSGYDDSYDSMHSGSDDHFQHFSSNEYVDYAFSIDQLTKVFINVQSTTVSETVQERVLSKVDPQNLNMRAKVKPKVWKLGGLSKEYSVLKDIIIASSLNNTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHGVFEEASQAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILHTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALICIRQYHEFKVSTDCVSSGRSVIAEEQHMVTKVDNEANVDHIISEPVLSKDARSISGICSNSAPLSFSEDTLTSESLACVSSNEVVADSEDIFNSSEIKCRLKVAFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQGEVKVQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTPGCTGADISLICREAALFALEENLEASKISMQHLETAAGHVKPSETEPYRELSSRFERLVCSSSQEDNVRTRFNNLEGKPGRESTKRTISASGGLEPLQFYAASEMGTYGDLSEKKLRTYELCHTYKVVTSIYENEYGWFTNIREGEFEVVEAVVALQMSSYKLAAGDSFTHCLQAIVLSWQSLKNKTMFKQRYLKDEAAIYKSCSEESSFQERDRTDLEAYELQRVEAQVLWVYDGCYVLWAVAFFEGL 1205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5370431 5383471 + Carg22816-RA Car19g00348 167315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00348 1205 CDD AAA 434 569 - -
Car19g00348 1205 SMART AAA_5 436 572 IPR003593 -
Car19g00348 1205 SMART AAA_5 787 925 IPR003593 -
Car19g00348 1205 Pfam ATPase family associated with various cellular activities (AAA) 440 569 IPR003959 GO:0005524|GO:0016887
Car19g00348 1205 Pfam ATPase family associated with various cellular activities (AAA) 791 922 IPR003959 GO:0005524|GO:0016887
Car19g00348 1205 Pfam AAA+ lid domain 594 628 IPR041569 -
Car19g00348 1205 Pfam AAA+ lid domain 945 990 IPR041569 -
Car19g00348 1205 MobiDBLite consensus disorder prediction 1 28 - -
Car19g00348 1205 ProSitePatterns AAA-protein family signature. 893 911 IPR003960 GO:0005524|GO:0016887
Car19g00348 1205 MobiDBLite consensus disorder prediction 1 29 - -
Car19g00348 1205 CDD AAA 781 923 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00336 Car-Chr6:1834205 Car19g00348 Car-Chr19:5370431 8.21E-37 dispersed
Car14g00194 Car-Chr14:917797 Car19g00348 Car-Chr19:5370431 8.09E-37 dispersed
Car19g00348 Car-Chr19:5370431 Car11g00077 Car-Chr11:409327 1.31E-36 dispersed
Car19g00348 Car-Chr19:5370431 Car03g01098 Car-Chr3:8868025 1.11E-35 transposed
Car19g00348 Car-Chr19:5370431 Car07g00893 Car-Chr7:4775693 9.27E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00348 - - cpep:111811570 1964.89