Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00359 ATGCCGGATTCCAATTTCCAAGACGCGATGTACGGTTCCGCCGTCGTGAACAACGGTGGCCGGGTTTTGGATAGCATTCAGAACCGAGTTGGCGATGAAGGTGACGACATTACTGTCGGGGAAGAGTCCATGGACAATCCTCAGATGCGCTTCGAAGATTCTGGGGGAATGAACCGAGTCCAGGACATTGTTCCTTCGTCGTATGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTGTCGTTCCGCGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGGATTCCTGCTGTTGGAAGCGTTCCCGTCAACCAACAGGGTACCAATGGCTTTCCTGTCAGATCGGTTCAACCACAAAGAGCTGCTTCATTGAATAGGTTTAGGGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGTTACACCGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTAATGCAGATGAAGTGGGCTCATCTTCACTTTTGTCTCAAACGTTGGATCCTGGACATGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCGATGATGCGTCGTGGGCCTGCTGGCCCTAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCGAACGCTGGAGTTCAAGAACTCTCCGTGAAGGATACCGAACAGAGCGATGGCGAAGCTAATGAATCCGACGCTGCAGTTAGTTAA 870 49.08 MPDSNFQDAMYGSAVVNNGGRVLDSIQNRVGDEGDDITVGEESMDNPQMRFEDSGGMNRVQDIVPSSYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTNGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYTVRKEVALRMQRKKGQFISSKANADEVGSSSLLSQTLDPGHDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNAGVQELSVKDTEQSDGEANESDAAVS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5475519 5479988 + Carg22805-RA Car19g00359 167326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00359 289 Pfam GATA zinc finger 218 253 IPR000679 GO:0006355|GO:0043565
Car19g00359 289 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Car19g00359 289 Pfam tify domain 83 113 IPR010399 -
Car19g00359 289 ProSitePatterns GATA-type zinc finger domain. 218 245 IPR000679 GO:0006355|GO:0043565
Car19g00359 289 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Car19g00359 289 Pfam CCT motif 146 188 IPR010402 GO:0005515
Car19g00359 289 MobiDBLite consensus disorder prediction 268 289 - -
Car19g00359 289 ProSiteProfiles GATA-type zinc finger domain profile. 217 269 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00359 - - - csv:101222542 489.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00597 Car-Chr17:5676352 Car19g00359 Car-Chr19:5475519 6.37E-62 dispersed
Car19g00359 Car-Chr19:5475519 Car11g00166 Car-Chr11:909897 6.89E-11 dispersed
Car11g01171 Car-Chr11:9390946 Car19g00359 Car-Chr19:5475519 0 wgd
Car19g00359 Car-Chr19:5475519 Car05g00483 Car-Chr5:2782368 9.63E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car17g00183 CST 1 180 Tify Gene Family AT4G14713 52.1 4.0e-45 178.7
Car08g01006 CST 1 180 Tify Gene Family AT4G14713 52.1 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5264 PF06203 CCT 1.30E-15 CL0281 Car TF