Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00359 ATGCCGGATTCCAATTTCCAAGACGCGATGTACGGTTCCGCCGTCGTGAACAACGGTGGCCGGGTTTTGGATAGCATTCAGAACCGAGTTGGCGATGAAGGTGACGACATTACTGTCGGGGAAGAGTCCATGGACAATCCTCAGATGCGCTTCGAAGATTCTGGGGGAATGAACCGAGTCCAGGACATTGTTCCTTCGTCGTATGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTGTCGTTCCGCGGGGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGGATTCCTGCTGTTGGAAGCGTTCCCGTCAACCAACAGGGTACCAATGGCTTTCCTGTCAGATCGGTTCAACCACAAAGAGCTGCTTCATTGAATAGGTTTAGGGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGTTACACCGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTAATGCAGATGAAGTGGGCTCATCTTCACTTTTGTCTCAAACGTTGGATCCTGGACATGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCGATGATGCGTCGTGGGCCTGCTGGCCCTAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCGAACGCTGGAGTTCAAGAACTCTCCGTGAAGGATACCGAACAGAGCGATGGCGAAGCTAATGAATCCGACGCTGCAGTTAGTTAA 870 49.08 MPDSNFQDAMYGSAVVNNGGRVLDSIQNRVGDEGDDITVGEESMDNPQMRFEDSGGMNRVQDIVPSSYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTNGFPVRSVQPQRAASLNRFREKRKERCFEKKIRYTVRKEVALRMQRKKGQFISSKANADEVGSSSLLSQTLDPGHDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNAGVQELSVKDTEQSDGEANESDAAVS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5475519 5479988 + Carg22805-RA Car19g00359 167326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00359 289 Pfam GATA zinc finger 218 253 IPR000679 GO:0006355|GO:0043565
Car19g00359 289 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Car19g00359 289 Pfam tify domain 83 113 IPR010399 -
Car19g00359 289 ProSitePatterns GATA-type zinc finger domain. 218 245 IPR000679 GO:0006355|GO:0043565
Car19g00359 289 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Car19g00359 289 Pfam CCT motif 146 188 IPR010402 GO:0005515
Car19g00359 289 MobiDBLite consensus disorder prediction 268 289 - -
Car19g00359 289 ProSiteProfiles GATA-type zinc finger domain profile. 217 269 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car17g00597 Car-Chr17:5676352 Car19g00359 Car-Chr19:5475519 6.37E-62 dispersed
Car19g00359 Car-Chr19:5475519 Car11g00166 Car-Chr11:909897 6.89E-11 dispersed
Car11g01171 Car-Chr11:9390946 Car19g00359 Car-Chr19:5475519 0 wgd
Car19g00359 Car-Chr19:5475519 Car05g00483 Car-Chr5:2782368 9.63E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5264 PF06203 CCT 1.30E-15 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00359 - - csv:101222542 489.96