Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00365 ATGGCTGCACAAAGCTCCAATTCCAAGTTTCTTCTCATATGTTCGTTCTTCCTTATCAACATTTCACTGTTCCTCTCTACACTTCCATTTGCAAGTTCTTTATCTTTCAACTTCACTTCTTTCAATCCAAGCAACACCGACATCATCTACGACAGAGCATTCCCGACAAACCAAGCAATCGAGCTCACTGGGGATGACGCCAACATGGATTATGTTGGAAGAGCTATGTATTCCCAACCCTTGCATCTTTGGGATAAAGTCTCTGGAAACTTGTCGAGTTTCCAAACCAATTTCTCCTTTGTCATTGATTCAAGGCAAAAATCAACCTATGGTGATGGCCTTACCTTCTTCTTTGCCCCTGTTGGTTCTAAGTTCCAGGCTAACATCTCAAGAGGCAGCGGCTTGGGTATTGGCTACGATCCCGAGTTATCGAATGCGACAGCCACATTTTTTGCAGTTGAGTTTGATATCTACAGCAACCTTTTCGACCCACCTGAAAAGCTCGAACATGTAGGTATCGATATTAGTTCAATGAGATCTATTGCATATTCGATATGGAAATGTGATATCAAGGGAGGGAAGAAGAATCATGCTTGGATTAAATATGATTCTGTTAATCATAATTTGAGTGTTACTTTTACTGGGTTTGATCTGAATGGTAGTATTCTGTTCCAACATCTTCACCATGTTGTAGATTTGAGGATGCATCTACCTGAACGGGTTACTTTTGGCTTTTCTGCTTCCACTGGTTTTGCATATGCAACTCACACTGTATATTCGTGGTCTTTTGAGTCAACCCTCGACTTGACCCTTAATCCAAACTTCACCTCTGATTCTAATTTGTCCCCACGTCCTGAGCCAAGTCCCGAGCCAAGTCCCGAGCCAATTCCTGAGTCAATTCCTGAGCCACGGCCTAACTTGCACCCAAGTCATAGTAATGGTAGCAAGGCAGGTCTAGCAGTCGGATTGGGCGTTGTTGGAGCAGCTATCATAATGGGAGGGTTAGTGTTGGTTTGGATAGTTGTTTGGAAGAAGAGAATGGCAATGAGGAAGAACATAGAGGAGGAGATAATGTTGGATGATTCTGAGTTTGAAAGGGGTAAAGGGCCTCGACGGTTTTCGTATAAGGAATTGGCTCGAGCAACGAACAATTTTAAGGAGGATAAGAAGCTTGGAAAAGGAGGATTTGGTGATGTTTATAAAGGTTTCTTAAGTGACTTGAATTGCGATGTTGCTGTGAAGAGAATATCAAAAGGGTCTAAGCAAGGGATAAAGGAGTATGCATCTGAGGTCAAGATCATCAGCCAATTGAGGCATAGAAACTTAGTTCAACTAATTGGTTGGTGTCATGAGAAAGGTAAACTTCTGTTGGTTTACGAATTCATGCCAAATGGAAGCTTAGACGCCCATCTTTTCAAAGAAAACAATTTCTTGACATGGGAATGTCGGTACAGAATCGCTCAAGGAATCGCCTCGGGTTTACTATATCTTCACGAAGAGTGGGAAAAATGTGTGGTGCATAGAGATATAAAGTCGAGCAATGTAATGTTGGATTCGAGTTTTAATGCGAAACTCGGAGATTTCGGGTTAGCTAGATTAGTAGACCATAACAAAGGTTCACAAACAACTCTTCTTGCTGGGACGATTGGCTATTTGGCTCCTGAATGTGCAACAACAGGAAGGGCTTCAAAGGAATCAGATGTCTACAGCTTCGGGATGGTTGCTTTGGAAATTGCTTGTGGAAGAAAACCTTTCGACCCGAACGCAGAGGACGAGAAGATTGTGATGGTGGAGTGGGTTTGGAAGCTTTATGGTTGTGGAAAGCTTCTTGAAGGAATAGACTCAAAACTGATCCAAGAAAGGTTTGGAGATGAGCAGCAGAAGGAGGAGCAGATGGAGCGTCTGATGGTGGTGGGTCTGTGGTGTGCTCATCCAGATAGCAATTGCAGACCTTCAATAAGACAAGCCATAAACGTGATGAACTTTGAAGCGCCATTGCCTCTTCTTCCATCTCAATTGCCTGTACCCACTTATGAATTTCTTCCCATTAGAAGGTCAAATGCTTCGTCTTCACCACCATCATCAGCTACTCAAAATAGTGTTGCTTCTCATACTATTAATAGCTCCAACTTTAGTAATGTCGTTAGCAACTCTTCCCACTAG 2163 42.67 MAAQSSNSKFLLICSFFLINISLFLSTLPFASSLSFNFTSFNPSNTDIIYDRAFPTNQAIELTGDDANMDYVGRAMYSQPLHLWDKVSGNLSSFQTNFSFVIDSRQKSTYGDGLTFFFAPVGSKFQANISRGSGLGIGYDPELSNATATFFAVEFDIYSNLFDPPEKLEHVGIDISSMRSIAYSIWKCDIKGGKKNHAWIKYDSVNHNLSVTFTGFDLNGSILFQHLHHVVDLRMHLPERVTFGFSASTGFAYATHTVYSWSFESTLDLTLNPNFTSDSNLSPRPEPSPEPSPEPIPESIPEPRPNLHPSHSNGSKAGLAVGLGVVGAAIIMGGLVLVWIVVWKKRMAMRKNIEEEIMLDDSEFERGKGPRRFSYKELARATNNFKEDKKLGKGGFGDVYKGFLSDLNCDVAVKRISKGSKQGIKEYASEVKIISQLRHRNLVQLIGWCHEKGKLLLVYEFMPNGSLDAHLFKENNFLTWECRYRIAQGIASGLLYLHEEWEKCVVHRDIKSSNVMLDSSFNAKLGDFGLARLVDHNKGSQTTLLAGTIGYLAPECATTGRASKESDVYSFGMVALEIACGRKPFDPNAEDEKIVMVEWVWKLYGCGKLLEGIDSKLIQERFGDEQQKEEQMERLMVVGLWCAHPDSNCRPSIRQAINVMNFEAPLPLLPSQLPVPTYEFLPIRRSNASSSPPSSATQNSVASHTINSSNFSNVVSNSSH 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5520194 5522356 + Carg22799-RA Car19g00365 167332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00365 720 MobiDBLite consensus disorder prediction 284 304 - -
Car19g00365 720 ProSitePatterns Protein kinases ATP-binding region signature. 391 414 IPR017441 GO:0005524
Car19g00365 720 MobiDBLite consensus disorder prediction 276 313 - -
Car19g00365 720 Pfam Protein kinase domain 385 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00365 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Car19g00365 720 ProSiteProfiles Protein kinase domain profile. 385 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car19g00365 720 ProSitePatterns Legume lectins alpha-chain signature. 237 246 IPR000985 -
Car19g00365 720 Pfam Legume lectin domain 33 268 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00365 - - - cmos:111455560 1327.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00306 Car-Chr2:2079154 Car19g00365 Car-Chr19:5520194 0 dispersed
Car02g00307 Car-Chr2:2084884 Car19g00365 Car-Chr19:5520194 0 dispersed
Car04g00797 Car-Chr4:4605120 Car19g00365 Car-Chr19:5520194 4.71E-06 dispersed
Car11g01167 Car-Chr11:9358980 Car19g00365 Car-Chr19:5520194 4.30E-174 dispersed
Car19g00365 Car-Chr19:5520194 Car14g00101 Car-Chr14:517786 1.01E-129 dispersed
Car19g00365 Car-Chr19:5520194 Car19g00367 Car-Chr19:5531262 4.19E-21 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89560 PF00069 Pkinase 1.20E-51 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00365 Car_Chr19 FPKM 14.619883 14.792854 11.549418 11.502114 13.227714 14.747416 13.323637 12.40248 13.132477 10.491223