Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00367 ATGTCTCCCATGGAGGTCTCTATGCTCACCTCTCCAAACCTTTTCCTCCTAATCTTCTGCTACTATAGCTTCTTGTGGAGTATAACCAACCCAGTTTCAGTCTCAGCCACCATTTCTTCTGAGAACTTAACGTTCAGCTTCGTTGGTTTCGACCCGAATGGCCACGACATTCATTACGAAGGAAATGCATACTCTTCCAACAATGTCATTCAGCTTACCATGAACCAGAGAGACATGCCTCTCGATGGAAGTGTTGGTCGTGCTACCTACAAAGATCCTCTCCATCTTTGGGAGAGTGTCCACAAGAATCTTGCAGACTTCACCACCAACTTCTCCTTCTCAATCGACTCGCAGGGAAGTCACCCTTATGGCGATGGCTTTGCCTTCTTCCTCGCCCCAAATGGCTCGAGTCTTCCGCATTACTCAGGAGGTAGGAACTTTGGTCTCTTGAATTCCAACAAGAGTGATCTAGAGTACTCAACACCAACATCAACAGCCAACAACTTCGTTGCTGTTGAGTTTGATACCTACTCGAATGTATTATCGGAGGATCCGGGGGGGAATCACATCGGCATCGATGTAAACTCCGTTATATCTAAATTCACTACTTCATGGTGGTGGAGTGACATAGAACACGGTGGGAAAGTTCAAGCAGTGATAAGTTACAATTCAACCTCCCACAATTTGACTGTTTTTCTAGTTGATGAAGGAGATTCTGAAGTTTCTCCAAGAAACTCCTCTAGCTTCTCTTTCAATATTGATTTAAGAGAGCATCTACCAGAATGGGTTACGATCGGTTTCTCGGGATCGACCGGAAATCTATTCGAGATTCATACGATTAGCTCGTGGAGTTTCAACTCTAGATTACAAGTAGAAGTGAATGTTACCACCACAACTGATCCAGCTAGCTCTCCAGTTCACTCCACTATAGGAATTTCCATGAAATGGCTCATGATAATCTTGGAAGTGGCACTTCCACTCATTCTAATCTTGGGGTTTGCTTGGTTTTGGATATGGATCATGAAGAGAACCATTAGAAGAAGAAGCCTGAGAAGGGACCAAGAGGAAGATCTTGAGAACGAAACAGGGCCAAGGAAGATTTCATATAAAGATCTATCAGAAGCAACCAACAAATTCAGTGATGAAAATCTATTGGGAGAAGGAGGATTCGGGAAGGTATACAGAGGATTTCTAGACAACAGGGAACTTGATGTAGCATACCTGCAAAGCAGCATTTCAAGTAAAGAATCCGACATCTACAGCTTCGGCATCGTGTGTTTGGAAATCGCCTGCGGAAAACGAGCCCTAGGTGAAACGAGAGAAGACGGAAGGAAATGTTTGATAAAGCTAGTTGAATGGGTGTGGGATTATTACCGACGAAGGAGTGTGATTGAGGCCGCGGATCCGAAATTGCGCCAAATTTTCAAAAGAGATGAGATGAAGCAACTGTTGATCGTCGGACTTGCTTGCGCTCAGCCCGATTTCTATCTGCGGCCTTCCATCAAACAGGTGATCGACATGCTTAACTTCAAATCTCCATTGCCGAATCTGCCATTGGAATATCCCGGATTCTCGACATCTGCAGTGTTTTTGAGTGCGCAAATGGAATCATTATGTTCATCGGCGTGTTCAGAGAACGGTAATCTCCATGGCAATAGCATATCTTCCAAGATTTCCACAGCTTCTTCCACATTTTCGAATTTGGGATTATTTCGATCTCAACTGTGA 1728 44.16 MSPMEVSMLTSPNLFLLIFCYYSFLWSITNPVSVSATISSENLTFSFVGFDPNGHDIHYEGNAYSSNNVIQLTMNQRDMPLDGSVGRATYKDPLHLWESVHKNLADFTTNFSFSIDSQGSHPYGDGFAFFLAPNGSSLPHYSGGRNFGLLNSNKSDLEYSTPTSTANNFVAVEFDTYSNVLSEDPGGNHIGIDVNSVISKFTTSWWWSDIEHGGKVQAVISYNSTSHNLTVFLVDEGDSEVSPRNSSSFSFNIDLREHLPEWVTIGFSGSTGNLFEIHTISSWSFNSRLQVEVNVTTTTDPASSPVHSTIGISMKWLMIILEVALPLILILGFAWFWIWIMKRTIRRRSLRRDQEEDLENETGPRKISYKDLSEATNKFSDENLLGEGGFGKVYRGFLDNRELDVAYLQSSISSKESDIYSFGIVCLEIACGKRALGETREDGRKCLIKLVEWVWDYYRRRSVIEAADPKLRQIFKRDEMKQLLIVGLACAQPDFYLRPSIKQVIDMLNFKSPLPNLPLEYPGFSTSAVFLSAQMESLCSSACSENGNLHGNSISSKISTASSTFSNLGLFRSQL 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5531262 5533424 + Carg22797-RA Car19g00367 167334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00367 575 ProSitePatterns Legume lectins beta-chain signature. 170 176 IPR019825 -
Car19g00367 575 ProSitePatterns Legume lectins alpha-chain signature. 259 268 IPR000985 -
Car19g00367 575 Pfam Legume lectin domain 43 293 IPR001220 GO:0030246
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00367 - - - csv:101209022 600.512
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01167 Car19g00367 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00367 Car-Chr19:5531262 Car02g00306 Car-Chr2:2079154 3.15E-24 dispersed
Car19g00365 Car-Chr19:5520194 Car19g00367 Car-Chr19:5531262 4.19E-21 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013790 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 2 1 0 0 1 1 0 1 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00367 Car_Chr19 FPKM 11.077065 14.530078 8.312898 10.06883 13.934193 15.00554 16.119514 7.776138 7.854101 9.893724