Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00378 ATGTTGGAGCCGATTAGTTGCTGCCAGAGCTCTCACTCCCAGATTTATAGTGCAGTTAAACAGAAGAATTCTTTCATGGCCTACTCTCATACTGTTCATCAACTTTGTGGGTCTTCCTTCAACTTACATTATCCACACTCGAAAGTCGCCGTTCCATCATGCACCATAAATTGCTGGAGGAATGGTTATTCTTTAGTCCACAGCAGTACTGCTACGGTAACGTTCAAAGTCGTTGGACCGAATGGATACAGTTGGTTTAATCATAGGCCTAAACGGAGGGAAAGATTAAGAACGCGTGCAGCGCTTGATGTTGCAGCTGCTGTAGATGTCATCAATGATTTAGGATTGGATACATTGACATTCCTAGCTGTGACTGTCGTAGTTGTTCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTCGGTTTCTTCTTCGCTGGGATTGTACTTAATCAACTTGGCGTGATTAGAAATATTGTAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTGTTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCGCGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATCGCTTTCACTGCATTTGAACTTCCTCCTAATGGGGCTATTGGTACAAAAATTTTGGTGTTCCTTTTTCACGCCAGACCCGACTTGGTTAACATCAGAAGCGTTGATGAAGCTGTTGTGATTGGTGCAGCTCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTCGCGACAAGATTTGGCTCGGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCCGTCCTTGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCGATGCTTGCACAAGAAAGTTTGAAGGCTTTAGGTGGCCTGGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTCGCAGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACTGTTGCTGGCACTTCGCTAATCACTCAGAAATTGGGCTTTAGTTATGACGACTTGACGACTTCAAGCCTGCTTCAATCATAA 1149 44.47 MLEPISCCQSSHSQIYSAVKQKNSFMAYSHTVHQLCGSSFNLHYPHSKVAVPSCTINCWRNGYSLVHSSTATVTFKVVGPNGYSWFNHRPKRRERLRTRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQLGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTKILVFLFHARPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSYDDLTTSSLLQS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5601757 5608036 + Carg22786-RA Car19g00378 167345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00378 382 Pfam Sodium/hydrogen exchanger family 121 370 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00378 Car-Chr19:5601757 Car18g01106 Car-Chr18:11067665 4.05E-14 dispersed
Car11g01163 Car-Chr11:9334589 Car19g00378 Car-Chr19:5601757 0 wgd
Car19g00378 Car-Chr19:5601757 Car05g00083 Car-Chr5:425102 1.58E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00378 - - csv:101209266 581.637