Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00384 ATGAAGGGCTGTTCACTTCATTCGTCCTCATATACTGTTCAATTGATTTTATTTTTATTCATCATTATTATTCATAAATTTTCTGCGCTCCGTTTGACTCAAATTTGTGCATTTCGGCATGAAACGCAGGCAGTTCATGTTGCTGCTCAATACGGACAGACTGCATTCTTGAATCACATTGTTGCCAAATTCCACGCTGACTTTGACGTTCCAGATAATGAAGGGAGGAGTCCTCTTCATTGGGCTGCATACAAAGGATTTGCAGATACAATTAGACTTCTTTTATTCAGAGATGCAAGCCAAGGAAGACAAGATAAAGAAGGTTGTACCCCTGTGCATTGGGCTGCATTAAGTGGAAATGTGGAGGCATGTACTGTTCTTGTGCATGCCGGAACAAAGCAAGAATTGTTGATCAAAGACAATGCCGGTTATACTCCTTTCCAGCTTGCATCTGATAAAGGTCATCGGCAAATTGCTAATTTCCTCGTTACTGCTGTTGTTGGACTTTGGGCATGGGCGGCCCTCTGTTTGACATTTGTTGCTATGATAATGTTTTATACGTGTAGTAGCAAGGATCCAGGCTACATAAAAAGACCCGGGGAGTTGGGCAATCCTGCCAATACAGAGGATCCTTTGTTGAGCATTGATCTCAACAATTCTTCAGTATGGATGGGGAATTGGTCTCAACTATGCCCGACTTGCAAGATAATTAGACCCGTTCGTTCGAAGCACTGTCCTACTTGTAATCGATGTGTGGAACAGTTTGACCACCACTGCCCGTGGATATCTAATTGTGTGGGGAAGCGGAATAAACGGGATTTTTTTGTCTTTGTCTGTTTGGGAACTTTGACATCACTCCTTGCTGGCTGTATTGCCATAAAAAGAATCTATGAAGTGCCTTCAGCATTGCAAACCGGAGAAACTTGGTTTCTTCATGTGGTAGTTCATTATCCCGGAGTCGTTATATTTCTTTTTCTGGACGGTATCATATTTTTGGCTGCCACAACTTTGACCGTGGCTCAGGCGTCTCAGGACCTGGCTACAGTACCATCTTCTTTGAATGTGCATCAGGAAGCCAAGGAGATTGGTGAACGTATTGCCGAACTTCACAAAGAGGTTCACGACCATTTGGAGATAGCACGAAATATCACCACTAACGAAGTGTCAAATGCCATTCGCTATGGATATCTTCGTGGTCCAGATGGGAAATTTCGGAATCCATATAACCATGGATGTCGAAAGAATTGCTCTGATTTCCTCATTCATGGCTATATAGACGACGAGATCGCTTGGCCTCCACTACAGCGTGCTGCCAGTTAG 1320 43.33 MKGCSLHSSSYTVQLILFLFIIIIHKFSALRLTQICAFRHETQAVHVAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLLLFRDASQGRQDKEGCTPVHWAALSGNVEACTVLVHAGTKQELLIKDNAGYTPFQLASDKGHRQIANFLVTAVVGLWAWAALCLTFVAMIMFYTCSSKDPGYIKRPGELGNPANTEDPLLSIDLNNSSVWMGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFVFVCLGTLTSLLAGCIAIKRIYEVPSALQTGETWFLHVVVHYPGVVIFLFLDGIIFLAATTLTVAQASQDLATVPSSLNVHQEAKEIGERIAELHKEVHDHLEIARNITTNEVSNAIRYGYLRGPDGKFRNPYNHGCRKNCSDFLIHGYIDDEIAWPPLQRAAS 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5676239 5681889 + Carg16305-RA Car19g00384 167351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00384 439 ProSiteProfiles Ankyrin repeat region circular profile. 107 131 - -
Car19g00384 439 Pfam Ankyrin repeats (3 copies) 46 132 IPR002110 GO:0005515
Car19g00384 439 ProSiteProfiles Ankyrin repeat region circular profile. 74 100 - -
Car19g00384 439 ProSiteProfiles DHHC domain profile. 229 279 - -
Car19g00384 439 ProSiteProfiles Ankyrin repeat profile. 107 131 IPR002110 GO:0005515
Car19g00384 439 Pfam DHHC palmitoyltransferase 229 340 IPR001594 GO:0016409
Car19g00384 439 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00384 K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] - csv:101206919 659.448
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01180 Car-Chr5:11197760 Car19g00384 Car-Chr19:5676239 4.43E-148 dispersed
Car12g01151 Car-Chr12:11120492 Car19g00384 Car-Chr19:5676239 9.39E-149 dispersed
Car19g00384 Car-Chr19:5676239 Car14g00444 Car-Chr14:2329254 4.53E-19 dispersed
Car19g00383 Car-Chr19:5674134 Car19g00384 Car-Chr19:5676239 2.24E-09 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00384 Car_Chr19 FPKM 1.335714 1.512349 1.74848 0.813952 0.937036 1.005364 0.695743 0.950923 0.944941 0.884364