Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00388 ATGTCGATTTCCTCTCTGGGTTTCGACGAATTCAAGGTTTTCGACATTGTTAAGGGAATGGAGGACAATGGCTTTGTCAATCAGTGGCAGAAGAGCTCAATGGATGAGCTTGGCGTCCCGTTAGCAGCAGCTTTTGGGGAGGATTTGCAGCATTCTTATGCTCAGTCAAACATCGATCAGAAGGCTTCTTTAAACCGTTCTCACAACGCCATACTCGGGTATGTGAAACAGCTCAAGAGTGATGGATGGAGTTCGTATCAAACGAATAATCATTCGTCAAACTCACCAGTCGTTTCGTATCCGACCGCGTCTGTTTCGGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCGAAAGAGGAGGTCGTATGTCCTCGGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGACACATTACGCCACCCAAGCCATGGAACGAAAAGTACCTCTACAAACAGTAGAATCCCACAGGCTCAAGATCACATTCTTGCAGAGCGGAAACGTCGAGAGAAGCTTAACCAGCGGTTTATCGCTTTGTCTGCTATAGTTCCCGGTCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTTAAACAGCTCCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGCAGGAAAGACATCGAATCCGTGGTATTCATCAACACATCAAACGAGGAAGACGACCCACTTCCCGAGATCGAAGCAAGATTATGCGACAAAAACGTCCTTATAAGAATACACTGCGAGAAAAAGAAAGATGTCATAGAGAACACAGTTGCTGAAATTGAAAAGTTGCACCTTACAATAGTGAACAGCAGTGTAATGTCATTTGGGAGTTATGCTCTCGACATAACCATTATCGCTCAGATGGATAACGAGTTCTGTTTGACGTTAAAGGACCTCGTGAGAAAGTTGCAGTCGACTTTGCGCTCGTTCGAATGA 975 45.13 MSISSLGFDEFKVFDIVKGMEDNGFVNQWQKSSMDELGVPLAAAFGEDLQHSYAQSNIDQKASLNRSHNAILGYVKQLKSDGWSSYQTNNHSSNSPVVSYPTASVSASNYTNQMDFTRPKEEVVCPRSISNLPSDMLVSQDTLRHPSHGTKSTSTNSRIPQAQDHILAERKRREKLNQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFINTSNEEDDPLPEIEARLCDKNVLIRIHCEKKKDVIENTVAEIEKLHLTIVNSSVMSFGSYALDITIIAQMDNEFCLTLKDLVRKLQSTLRSFE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5695566 5698114 + Carg16309-RA Car19g00388 167355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00388 324 Coils Coil 313 324 - -
Car19g00388 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Car19g00388 324 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Car19g00388 324 Coils Coil 199 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00388 - - - csv:101209844 537.724
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01157 Car19g00388 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00789 Car-Chr3:6550352 Car19g00388 Car-Chr19:5695566 2.94E-33 dispersed
Car07g00533 Car-Chr7:2704264 Car19g00388 Car-Chr19:5695566 8.68E-33 dispersed
Car19g00388 Car-Chr19:5695566 Car02g01373 Car-Chr2:9070511 3.71E-18 dispersed
Car16g00766 Car-Chr16:4862855 Car19g00388 Car-Chr19:5695566 9.80E-52 transposed
Car11g01157 Car-Chr11:9287297 Car19g00388 Car-Chr19:5695566 8.19E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g826 . . . . . . . . Cmo19g00526 Cmo11g01441 . . . . Sed10g1926 Cpe04g00344 Cpe15g00409 Bhi05g00987 Tan02g1087 Cmetu01g1268 Lac12g0126 Hepe02g0676 . . Cla02g00729 Cam02g0775 Cec02g0773 Cco02g0802 Clacu02g0770 Cmu02g0763 Cre02g1077 . Cone8ag1047 . . Lsi03g00644 Csa07g00647 . Cme01g00155 . . . . . . . . . . . . Cma19g00513 Car11g01157 Car19g00388 . . . . . . . . . . . . . . . . . . Chy01g00164 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000301 3 5 4 3 4 4 5 4 4 4 4 4 5 4 4 7 4 9 5 4 4 5 3 5 5 4 4 11 7 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5265 PF00010 HLH 1.80E-11 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00388 Car_Chr19 FPKM 41.719257 39.738636 23.878853 22.331392 40.280132 34.143154 42.524826 24.114193 27.379841 27.159397