Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00403 ATGTCACCACCAGAGTCAGCTGGCAGATCTGCACAGTTCAGAGGTTGCAAAGTTGTAATTATAAATCTTCTTTATTTCCAGAATTTGGAATCAGAGAAACAGCTTAAGTTTTTCCAAGGTTGCGTTGCTACTGCTTTTGCTGAACGGGATCATTCCATTATGGAGGCTGAGAATGCGAAGGAGAAAGAAGAGTCAATGTCGCAAAAGCTTAAAGAGGTCCAAAATAGATTAGAAGAGTTGTCTTCTGATTGTCTTGATTTGAGGGAAACTAATGATACACTACGCATTAACCTAGCCAGGCAAGAAGAGTGGAATGAGGTTTCAAAACAGGTAATCAATAAGTTTTACGAGATCAGACAGAATTCTCTCGAAGAATTTGTGGATACTAGCTGGGACGAAAAATGTCAGTGTCTTTTACATGATCCTCTAGAAATGTGGAGTTTCAACGATTCATCAACGTCTAGATATATAAATTCTTTGGAAGAAAGACTGGAGACAATGAAGAAAACAGTGGATGATCTTCAAAATAAGCTACGGATGGGTGTGGAAATTGAAAAGCATTTAAAGTTGAAGGTGAAAGATTTGGAGTTAAAGCTGATTCGCATGGCTGATACGGTCAAGAGCAAGATATCAGGGTTTCATCAATACTATTCTGACCACCGAGATCATATATTGAATTTATTGGACAATGAGAAATCTAATATGAATTCAACAATAGGAGAGATTGAAGAAAAGATCATGCAATATAGCTGGGCAGTTCAGAATTTGAAAGATTCTGAGAAAGAGCTGAAAACTGAAAATGATTCTGAGGATGGCCATTTGATTACCAATGCCAAGATGAAAATTCCTGAGTTACCAGATCCCATTGCTGATGAAAATGTTGAGGCCTCTGAAGCTCTCGCTTTGGCACTTCAAGAAAAGGTTTCAGCTCTGTTACTTCTTTCACAACAGGAAGAGAGGCATCTGCTAGAGAGAAATGTCAATGCAGCTCTTCAAAGAAAAACAGAGGAGCTTCAGAGAAAGTTACTACAGGTTACCCATGAAAAAGTTAAAGCACTAATGGAGCTGGCCCAAGTAAAGGAAGAACTTCAACTACTTAAAGAGAAAAGTGTTGATGATTTGAAACGAGGAGCCGGGACTGTGGAAAGGAAACTTGTTAGTCACGAGAGAGAGGGGAAACTGAAAGGCTTGCTGAAGGCTTCATATCTGAGACGTTGGGTCGGTACGCCAGAAATCAGTGGGAGTGAAGCTGCAGTTTACGATGATAACGAAGAAAATTACTCTTCTCGAAAGTCTGCTGTGGATTTTGCCAGAATGAAAATTGAAAATGCTACTCTTAGAGAAAGTATTGAAAGCATGGAGCAACTGACCACTTCAATTCACAGGCTTCGTCTCTCTCTTCTGAAGGCCAAAGAGTCTGGTACTTCTGAAGGTCCAACTTCAAGCGTTTTGGAAGCTCTAAAGGGCATAATCAATGAGGCAAAACTCATAAAGACTGCACTTAGCAGCTCTTTACCCATCAGTTGGTCAGCTGAGGTAAATATTGAGTCCAGTGGGGAAACTTTACATGATTCTTCAAATGATGTTTTAGGAGGAGAGTCTAGACTGGGAAAGATAGATTTCGTTTCTGCTGCTGGTTTTGAGATGGTTGAGCTCCTTGTTTCTGTGGCTGAGTTGTTATTAAAGGATTACAACATGTCTGAAAGTGGTTCTTGA 1716 39.92 MSPPESAGRSAQFRGCKVVIINLLYFQNLESEKQLKFFQGCVATAFAERDHSIMEAENAKEKEESMSQKLKEVQNRLEELSSDCLDLRETNDTLRINLARQEEWNEVSKQVINKFYEIRQNSLEEFVDTSWDEKCQCLLHDPLEMWSFNDSSTSRYINSLEERLETMKKTVDDLQNKLRMGVEIEKHLKLKVKDLELKLIRMADTVKSKISGFHQYYSDHRDHILNLLDNEKSNMNSTIGEIEEKIMQYSWAVQNLKDSEKELKTENDSEDGHLITNAKMKIPELPDPIADENVEASEALALALQEKVSALLLLSQQEERHLLERNVNAALQRKTEELQRKLLQVTHEKVKALMELAQVKEELQLLKEKSVDDLKRGAGTVERKLVSHEREGKLKGLLKASYLRRWVGTPEISGSEAAVYDDNEENYSSRKSAVDFARMKIENATLRESIESMEQLTTSIHRLRLSLLKAKESGTSEGPTSSVLEALKGIINEAKLIKTALSSSLPISWSAEVNIESSGETLHDSSNDVLGGESRLGKIDFVSAAGFEMVELLVSVAELLLKDYNMSESGS 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5921537 5929483 + Carg16324-RA Car19g00403 167370

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00403 571 Coils Coil 436 456 - -
Car19g00403 571 Coils Coil 53 97 - -
Car19g00403 571 Coils Coil 313 369 - -
Car19g00403 571 Coils Coil 225 245 - -
Car19g00403 571 Coils Coil 157 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00403 - - - cmos:111454939 1000.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g721 . . . . . . . . Cmo19g00558 . . . . . . . Cpe15g00433 Bhi05g01026 . . . . . . Cla02g00690 Cam02g0722 Cec02g0738 Cco02g0760 Clacu02g0734 Cmu02g0730 Cre02g1041 . Cone8ag1074 . . Lsi03g00584 Csa07g00678 . Cme01g00127 . . . . . . . . . . . . Cma19g00545 . Car19g00403 . . . . . . . . . . . . . . . . . . Chy01g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004516 1 9 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00403 Car_Chr19 FPKM 2.093354 1.219488 8.752337 9.76862 4.181475 3.084597 4.300921 136.806625 144.718491 179.742813