Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00407 ATGGCCATGGCGGTGACTCTGATCGTCTCTGCTGTTCTTCTTGTTTCAGAAAAGAAAAATCGTCGTGTTGTTAATTGTTTGTGTTTGTCAAAGCCAGAAGAGGCTCAATACAAGGGAGGGATAGTGGAGAACCCAGAGTTGAATGATGGGTTGAAAGGATGGTTGGCATTTGGGAGTGCAAAAATAGAGCATAGAGAAGAAGCAAATGGCAACAAATTCATAGTCGCACGTGCGAGGAACCATCCATTTGATGCCTTATCCCAGACTCTTCACTTGCGTACAAACCTCATCTACACCTTTTCTGGTTGGGTACAAGTGGACGAGGGAAAAGCTGACGTGGTAAGCTATTATAAAAACAAGAACAGGTTATGTACACGTGGCAGTTACTACCGCCCAATCAAATTGCTGGGCGGCCTCACTGTCAGCGAATCAGGTCCAGCTGAGCTGTACTTCCAGTATCGCAAGAGGGTAGTGAAGATCCAGGCTATCGATAGAGAAGGAAATCCTCTCTCCAATGCAACCATCTCTCTGCTACAACGGCGGCCGGGCTTCCATGTCGGCTGCGCCATCAACCAGAACATTCTCAACAACTCCCCTTACCAGAACTGGTTCCTCTCCCGCTTCACCACCACCACTTTCGAGAATGAAATGAAGTGGTACAGCACCGAGAGGACGCAGGGACATGTTGATTACTCCGTACCGGACGCCATGATCCAGTTCACTAAGCAGCATAACATCGCCGTCCGTGGCCACAATATCTTTTGGGATGACGAAACCTACCAACAAGGTTGGCTGAAATCGCTCTCGAAGAATGATCTCTTTCGTGCCGCCCGAAAGAGACTCGATTCGGTCATGGCGAAGTACCGAGGGCAACTGATTGCTTGGGATGTGGAGAATGAGAATCTCCATTTTGATTTTTTTGAGAGAAAATTAGGGTCAGCTGCTTCCGGTATGTTTTATAATTGGGCGATGAAACGCGATGGATCGATTCCGTTGTTTATGAATGATTACAATACCATTGAGTATAGCGGCGATGCGGCTTCTTCTCCGGCGAAGTATCTTCAAAAGCTGGATTCTATCAGACGATATTCTGGTAATAGCGGCGGCAGATTTGCGATTGGACTGGAATCGCATTTCGGACCTTCTCCTAACATTCCTTACATGAGATCCGCCATTGATACCCTAGGTTCTGCCGGAGTACCGATTTGGCTCACCGAAGTCGACGTTTCTAACTCGCCAAATCAGGTGATTATAAGAGCATTTCAACCGTTCTTAGTCTTAGTTTTTGGTAGAACTGATGGTAAATTAAGATATTACAAACCATCTCAATTTGTTAGGAATGGATCAAAACCAAAATCAAAATCAATTGAGACGAACGTAACATTTCGAGATCGAGATTTGAATAGTTAA 1410 45.67 MAMAVTLIVSAVLLVSEKKNRRVVNCLCLSKPEEAQYKGGIVENPELNDGLKGWLAFGSAKIEHREEANGNKFIVARARNHPFDALSQTLHLRTNLIYTFSGWVQVDEGKADVVSYYKNKNRLCTRGSYYRPIKLLGGLTVSESGPAELYFQYRKRVVKIQAIDREGNPLSNATISLLQRRPGFHVGCAINQNILNNSPYQNWFLSRFTTTTFENEMKWYSTERTQGHVDYSVPDAMIQFTKQHNIAVRGHNIFWDDETYQQGWLKSLSKNDLFRAARKRLDSVMAKYRGQLIAWDVENENLHFDFFERKLGSAASGMFYNWAMKRDGSIPLFMNDYNTIEYSGDAASSPAKYLQKLDSIRRYSGNSGGRFAIGLESHFGPSPNIPYMRSAIDTLGSAGVPIWLTEVDVSNSPNQVIIRAFQPFLVLVFGRTDGKLRYYKPSQFVRNGSKPKSKSIETNVTFRDRDLNS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5943685 5951915 - Carg16328-RA Car19g00407 167374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00407 469 Pfam Glycosyl hydrolase family 10 184 414 IPR001000 GO:0004553|GO:0005975
Car19g00407 469 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 172 469 IPR001000 GO:0004553|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00407 - - - csv:101212207 586.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00407 Car-Chr19:5943685 Car20g00664 Car-Chr20:3743153 9.62E-67 dispersed
Car19g00407 Car-Chr19:5943685 Car09g00272 Car-Chr9:1486765 1.07E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00976 Cam10g0999 Cec10g1029 Cco10g0992 Clacu10g1020 Cmu10g1803 Cre10g1177 . . . . . . . . . . . . . . . . . Cmo04g00475 . . . . Car19g00407 . Cpe01g00397 . . . . . . . . . . . . . . Lsi03g01015 . . Cme07g02196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00407 Car_Chr19 FPKM 18.385359 19.180737 2.117468 1.252615 11.359892 13.397749 10.945063 0.0 0.0 0.0