Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00408 ATGCTGTCTATGGACATGGAAAAAGAAGGTCTGAGCGGGCGAACACTGACGCTTAAACTAAAATCTGCATCCTTTGAGGTTAGAACCAGAGCCGTAACTTTGCAACAATACATTTGTTCTAGCAGTGACATCTTGCAACATGCATCAAAGCTGCTAAAGGCTGAACTGCCCATTTCTTTGAGACTAATCGGGTTGCGGATATCTCACTTCAATGAAGATGGAGCCATTGCTGGGTCTGATCCGGCTCAAACACCTATTACTCGATTTATTACATCAGGAGATGCTACTAGAAAGAATATGGGTGATTGTTGCACCTCAAGTCCTGATCCTAATGTTCATAGCCTCATGGATGAATCTGAAATTGATGTATTTATCAATGGCACTGAAACACACCATCAAGATAGTAGTCATCCAAGAATTGGCAATAATCTCTCGAATATGGATGACCGAAAGTGTACATCCAGCAATGACGCTGAGAAGTCGGAGAAATTTAAGAATCTTTCGAGCAACGTCAGTACTGCTCAGGTGGACAATTTGAATGGCTTTGTCCCTCGAGTATCGGGCACAGCATGTGCTTCTTCCCCTAGAAACCTCGAAGGCAATCAGAATAATAATGTCGAAGCCAGAACTAACGTCGAGGCAAGATCACCAGATAATAATGGACAGAATTTGTGGATCGATGACTACAAATGTGCAATCTGTGGTGCCGAAGTACCAGAGAGTTTCATTGATGAAAGACAAGAGCACATGGATTTTCACATTGCGGAAAAACTCCAGGAAGAGGAATCTGGCATTCGTTCAAGAACCCTTACGCCAATCCGAAGGACTCCTGACAAGAACCAACTGGCAAGTCAAAGAAAGCAGAAAAGGCAAAAGTCAACTCCAAAGAAAGAGGTCAAACACATTCCAATTGACTTATTCTTTGTGAAGAATAATCAGAAGTTTTAG 948 42.3 MLSMDMEKEGLSGRTLTLKLKSASFEVRTRAVTLQQYICSSSDILQHASKLLKAELPISLRLIGLRISHFNEDGAIAGSDPAQTPITRFITSGDATRKNMGDCCTSSPDPNVHSLMDESEIDVFINGTETHHQDSSHPRIGNNLSNMDDRKCTSSNDAEKSEKFKNLSSNVSTAQVDNLNGFVPRVSGTACASSPRNLEGNQNNNVEARTNVEARSPDNNGQNLWIDDYKCAICGAEVPESFIDERQEHMDFHIAEKLQEEESGIRSRTLTPIRRTPDKNQLASQRKQKRQKSTPKKEVKHIPIDLFFVKNNQKF 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5954437 5964290 + Carg16330-RA Car19g00408 167375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00408 315 MobiDBLite consensus disorder prediction 192 221 - -
Car19g00408 315 MobiDBLite consensus disorder prediction 129 170 - -
Car19g00408 315 MobiDBLite consensus disorder prediction 137 151 - -
Car19g00408 315 ProSiteProfiles Zinc finger UBZ3-type profile. 224 261 IPR041298 -
Car19g00408 315 Pfam Ubiquitin-Binding Zinc Finger 227 261 IPR041298 -
Car19g00408 315 Pfam impB/mucB/samB family C-terminal domain 2 74 IPR017961 GO:0003684|GO:0006281
Car19g00408 315 MobiDBLite consensus disorder prediction 259 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00408 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - csv:101212452 442.195
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00408 Car_Chr19 FPKM 13.09155 12.19055 32.848854 29.908081 5.719765 7.95874 5.974451 28.665953 35.511765 28.439207