Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00431 ATGAATTCTGGTTCGTCTCGCTCAGCTAATTCCTCCGCCCAGAGATCCAAGCGAATTCTCGACAATTCTTCTCCGTCGAGCCCTTCCAGTAGCGGTGCCAACAAGAAGAAACGGATCGACCAGAAAACCCTAGGCGTCGCATGGGGAGCCAATTCCAGTTCATCCTCTCGCTCCTCTCGCAAATCGCCCTTTCCAGATTTCGGAATTCTTTTTTCTGAATACAGCTATATGGTAGAAAAGAACAGAAAACTGCACAATCAGTTTAACGTTGACGCTTCAAGTGCTTCACATAGTGGTACGAACTCCGGAAATCAAATATTTCAGGGCGTTTCTATATTTGTTGACGGTTTCACGATTCCTTCAAGTCAGGAATTGCGGGGTTATATGTTGAAGTATGGTGGCAGATTTGAGAATTATTTTTCAAGACGTAGCGTTTCTCATATAATTTGCACCAATTTACCGGACAGTAAAGTAAAGAATCTCAGGTCCTTCAGCCGTGGACTTCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGGGTTCCTTACCAACTTGATCAGCTTGTAAGTAATCAACCAAGATTATCAGCATTCTTTTCTATGAAAAAAGGTCCGATGTTGGAGAAACGCAAAATGTGCATGACTACTGAAAAGAACTATGAAACAGAGGATTCAATGTCCCTGGTGGCTGTGAATTTAAAGGATTCACGGTCTGAAGTGAATGAATTGATAGAATCTAGAGCAGAGATGCATTCCGACTCTGAAATGAATCTTCAAGATAATGCAGATACTAAACTGAATGAGAAGCCAAGTGATGATTTAGAGGCTGGCGAATTAAAGGATACAAGTATATCTGATGTAGATGAATCTATTGAATATGTACCACAAACCTGTGAAAGTTTTGAGATGCTTCCTCGAAATAATGCTGATGTAGAAGTAAAGAAAGAGCCAAGCAATGAAAAATGTGATCATGCAGATGAAGAACCAGGAATTGTTGATGTGGGTCAGAGCAGTGAAGAAAATATATCTAGTTTGCATGGTTTGTCTAAGTCAACTCACAATGATAGCACCAATAATTATTATAGCGATGGATCATCAAGTTCTTTGGTGGCCGGGTCTTCTAAGCTGCGGCATTCAAATTTTGGGAAGGCAGATTTTGTTGAAAGTTATTTCAAGAAGTCTAGGCTGCATTTCATTGGAACTTGGAGAAATCGTTACTATAAGCGTTTTCCACGTTCAGCTAGTGGGTCCAATTCTGTAACTTCTCATATCAGTGGTTCTTCCCATTATCAGTCTACCACTATTATCCACGTTGACATGGACTGCTTTTTTGTCTCAGTGGTTATTCGAAACAGTCCACAATTTAAGGATAAACCTGTAGCTGTGTGCCACTCGGATAATCCTAAAGGAACTGCAGAAATATCATCTGCAAACTACCCAGCTCGAGGTTATGGAGTCAGAGCGGGAATGTTTGTTAGAGATGCGAAAGCTCTTTGTCCCCAACTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCACTGTGAGAAAGTGCAGGCTGTAAGTTGTGATGAAGCATTTTTGGATATCTCAGGCACAGACAAGGTAGATCCTGAGGTTTTGGCTTCAAAAATTAGAAAAGAAATTTTTGATACAACTGGATGTACTGCAAGTGCTGGAATATCTACAAATATGCTAATGGCTCGCCTTGCTACCAGAACTGCAAAACCTGATGGCCAGTGTTACATTCCTTCGGAGAAGGTTGATGATTATTTAGATCCGCTTCCCATTAAGGATCTTCCCGGGATAGGGCGTGCCTTGGAGGAGAAGTTGAAGAAAAGAAGTGTATTTACTTGTGGTCAGCTGCGTATGATATCCAAGGATTCTCTTCAAAAAGACTTTGGATTGAAAACAGGGGAGATGTTATGGAATTATAGTCGGGGGGTGGACAATCGTGCTGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAATTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTCGAATCTTTGTAAGGAGGTTTCATTACGATTGCATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATAAAAAAACGAAGGAAAGATGCCGATGAACCGACAAAGTATATGGGCTGTGGAGATTGTGAAAACCTGAGCCACTCGCTGACGGTTCCTGATGCCACTGATGACCTGGAAATTCTTCAGAGGATTGCAAAGCAGCTTTTTGGGTTTTTTGTCATAGATGTCAAAGAAATTCGTGGTATTGGTTTACAAGTTTCGAAGCTTCAAAATGTGGATATCTCTAAGCAAGGGATAAAAAGAAACTCTTTGGACGCATGGCTTCATTCGTCTGGAACGACAAATGTGGAAAATAGTACTGGTCCTTTGGTAAAGGAAAGGGCTAATATAGATAGTGAGAAACAGTGTGACTCTGGAGCTTTAGATCAGTTATCTGCTGATCCTACAAGCCATCTGATTCAGATGGAGAATAACCATCTCCACTGTGAATCTTTGAACCCGGTTACAGCTCCACCTCTGTGCAATCTGGATATTGGAGTTATAGGGAGCCTTCCTCCTGAACTCTTTTCAGAGTTAAATGAAATCTATGGTGGAAAACTAGATGATCTCCTAGCTAAAAGCAGATACAAAAGTGAAGCTTGCTCGTCTTCTTTAAGGGTTTCGTCTCAAGGACCAGGAGGAGGTGAAATTTATCTATGGAGTAGCTTCTTGTCCGGTGATAGACTTACTTTATCAGATGCCCAAGAAAACAAAACACAGTTGGAAAATAAGCACATTGTTGAACGTTCCCCACCTGCACAGATTTCTGGGGAAGGATTGTGCAATGTGGTGACTCCTATACCCACCTCTGGATCTCATAGAATTGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCGTCAGTATTACAAGAGCTACCTGAACCACTGAGGGATGACATACTTAAGCAACTCCCAGCACACAGGGGAAAAGAGCTTTCTTTAGAACATTCAGTAAAAATTCATCACGAATCTTGTGATGCCACTGCCAGTACGTCTGGCTCAATAGACTCTTTCACGGAGACTGGTCTTTGGTCTGGGAACCCTCCTCTATGGGTTGATAAGTTTAAAGCCAGTAATTGCTTGATATTACAATTTCTTGCAGAGACGTATACAGAATCGGGGTCACCTGAAAATCTGTATGGGATTTTGCTGAGGACTTTATCTAAATCTTGGCATCCTTCAGTTCCGGAATCTGATGGTTGGGATGGTGCTATTTACGGTTTATGTGAACTTCTTAAGCAGTACTTTAAGTTAAAGATAGAGCTGGACATCGAGGAGACCTATGCTTGTTTTCGTCTTCTTAAGAGGTTAGCGATGAAATCCCAGGGAGCAGTCAATGAATTCTACGGCGGAAGTTTGAAGGTAAAATGTTCATATGGAAGTGCTACCACTCTACTAGGTGATAAAGAAGTTAAGCTGTGGAGAACAAAGTATCTGCTTCTTCAGAAATTTCCTTTGGCATGGTAG 3621 41.48 MNSGSSRSANSSAQRSKRILDNSSPSSPSSSGANKKKRIDQKTLGVAWGANSSSSSRSSRKSPFPDFGILFSEYSYMVEKNRKLHNQFNVDASSASHSGTNSGNQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRRSVSHIICTNLPDSKVKNLRSFSRGLPVVKPTWILDSVASNKLLRVPYQLDQLVSNQPRLSAFFSMKKGPMLEKRKMCMTTEKNYETEDSMSLVAVNLKDSRSEVNELIESRAEMHSDSEMNLQDNADTKLNEKPSDDLEAGELKDTSISDVDESIEYVPQTCESFEMLPRNNADVEVKKEPSNEKCDHADEEPGIVDVGQSSEENISSLHGLSKSTHNDSTNNYYSDGSSSSLVAGSSKLRHSNFGKADFVESYFKKSRLHFIGTWRNRYYKRFPRSASGSNSVTSHISGSSHYQSTTIIHVDMDCFFVSVVIRNSPQFKDKPVAVCHSDNPKGTAEISSANYPARGYGVRAGMFVRDAKALCPQLVIFPYDFKSYEEVADQFYDILHKHCEKVQAVSCDEAFLDISGTDKVDPEVLASKIRKEIFDTTGCTASAGISTNMLMARLATRTAKPDGQCYIPSEKVDDYLDPLPIKDLPGIGRALEEKLKKRSVFTCGQLRMISKDSLQKDFGLKTGEMLWNYSRGVDNRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLSNLCKEVSLRLHGCGVQGRTFTLKIKKRRKDADEPTKYMGCGDCENLSHSLTVPDATDDLEILQRIAKQLFGFFVIDVKEIRGIGLQVSKLQNVDISKQGIKRNSLDAWLHSSGTTNVENSTGPLVKERANIDSEKQCDSGALDQLSADPTSHLIQMENNHLHCESLNPVTAPPLCNLDIGVIGSLPPELFSELNEIYGGKLDDLLAKSRYKSEACSSSLRVSSQGPGGGEIYLWSSFLSGDRLTLSDAQENKTQLENKHIVERSPPAQISGEGLCNVVTPIPTSGSHRIDLLPSSLSQVDPSVLQELPEPLRDDILKQLPAHRGKELSLEHSVKIHHESCDATASTSGSIDSFTETGLWSGNPPLWVDKFKASNCLILQFLAETYTESGSPENLYGILLRTLSKSWHPSVPESDGWDGAIYGLCELLKQYFKLKIELDIEETYACFRLLKRLAMKSQGAVNEFYGGSLKVKCSYGSATTLLGDKEVKLWRTKYLLLQKFPLAW 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6095798 6108270 - Carg16353-RA Car19g00431 167398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00431 1206 MobiDBLite consensus disorder prediction 1 62 - -
Car19g00431 1206 MobiDBLite consensus disorder prediction 319 341 - -
Car19g00431 1206 MobiDBLite consensus disorder prediction 272 292 - -
Car19g00431 1206 Hamap DNA polymerase IV [dinB]. 439 810 IPR022880 GO:0003887
Car19g00431 1206 ProSiteProfiles BRCT domain profile. 102 186 IPR001357 -
Car19g00431 1206 MobiDBLite consensus disorder prediction 254 292 - -
Car19g00431 1206 Pfam BRCT domain, a BRCA1 C-terminus domain 104 187 IPR001357 -
Car19g00431 1206 MobiDBLite consensus disorder prediction 46 62 - -
Car19g00431 1206 Pfam impB/mucB/samB family C-terminal domain 679 798 IPR017961 GO:0003684|GO:0006281
Car19g00431 1206 Pfam impB/mucB/samB family 445 591 IPR001126 GO:0006281
Car19g00431 1206 Pfam IMS family HHH motif 605 632 IPR024728 -
Car19g00431 1206 MobiDBLite consensus disorder prediction 1 34 - -
Car19g00431 1206 ProSiteProfiles UmuC domain profile. 442 623 IPR001126 GO:0006281
Car19g00431 1206 MobiDBLite consensus disorder prediction 319 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00431 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - csv:101214381 1867.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g00018 Car-Chr7:110292 Car19g00431 Car-Chr19:6095798 4.77E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00431 Car_Chr19 FPKM 20.957855 18.07197 16.873665 14.621659 17.409271 12.201734 18.356562 25.436356 28.303568 28.30323