Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00436 ATGGCGAAGCCATTGATGGCTATGGTATTTCTTCTTTGCTTCTTCGCTCTCCATTCTGCCGATCATTCCTCTTATCGTTCCCTTGAGTACTCGATTCTTCCTCGCGGTCTGTCTGACCAGAAGTCTTTGTGCTCTCAACTTGTTCAACCTGCTGGTTATCCTTGCGCGGAGCATCAGATACAAACGAAGGATGGATTTTTATTGGGTCTTCAACGTGTATCTTCATGCGATGGAGATTTGGAAAAGCAAAAGGGCCCTCCAATTTTGCTACTCCATGGACTGTTCATGGGTGGCGATGCATGGTTTTTGAATTCTGCAAGAGAATCTTTAGGATTTATCCTTGCAGATAATGGATTTGATGTGTGGATAGGAAATGTGCGTGGAACTCGGTGGAGTCATGGGCATACATCCCTATCAGAGGATGAGAAGCATATCACTGCTCCATTAGTACGTCTAATGGTTGACACACATCTCGATACGATAATTCTTGCCGCGGGATTCCATGAACTCAACTTTAAAAGTGATTGGGGAACAGTCCTTTTAGATGATCTTTGTGATCGGCTCGTTAACTGCATCAATGTTCTAAGTTCAATAACAGGTGAAAATTGTTGCCTTAATGGCTCACGGTTCGACTTATTTTTCGAATACGAACCACATCCATCATCAGCAAAAAACTTGCACCATCTTTTCCAAATGATCCGCAAGGGTACTTTTTCCAGGTATGACTATGGATTGTTAAAGAATCTGAGAGTCTATGGCCAAAGGAAGCCTCCTGCATTTGATCTCAGCCGTATTCCTAAGTCCTTGCCGCTGTGGATGGCGTACGGGGGCAGCGACGAGTTGTCGGATTGGACAGATCTGCAGCACACGATCAAGGAGCTGAAGTCGGTACCAGAATTGGTTTACCTTGAAAATTATGGCCATGTTGACTTCATTTTGAGCATGAAAGCGAAGGAAGATGTGTATGATCCTATGATCAAATTCTTGAAATCCTTGGGAAAGTCAGGTAGTTTGTAA 1017 43.76 MAKPLMAMVFLLCFFALHSADHSSYRSLEYSILPRGLSDQKSLCSQLVQPAGYPCAEHQIQTKDGFLLGLQRVSSCDGDLEKQKGPPILLLHGLFMGGDAWFLNSARESLGFILADNGFDVWIGNVRGTRWSHGHTSLSEDEKHITAPLVRLMVDTHLDTIILAAGFHELNFKSDWGTVLLDDLCDRLVNCINVLSSITGENCCLNGSRFDLFFEYEPHPSSAKNLHHLFQMIRKGTFSRYDYGLLKNLRVYGQRKPPAFDLSRIPKSLPLWMAYGGSDELSDWTDLQHTIKELKSVPELVYLENYGHVDFILSMKAKEDVYDPMIKFLKSLGKSGSL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6121314 6126408 + Carg16358-RA Car19g00436 167403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00436 338 Pfam Partial alpha/beta-hydrolase lipase region 45 104 IPR006693 GO:0006629
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00436 K01052 LIPA; lysosomal acid lipase/cholesteryl ester hydrolase [EC:3.1.1.13] - csv:101220653 501.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01318 Car-Chr11:10877267 Car19g00436 Car-Chr19:6121314 7.97E-18 dispersed
Car13g00869 Car-Chr13:9209563 Car19g00436 Car-Chr19:6121314 2.89E-07 dispersed
Car19g00436 Car-Chr19:6121314 Car14g00647 Car-Chr14:3604348 7.26E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g637 . . . . . . . . Cmo19g00591 . . . . . . . Cpe15g00463 . . . . . . . Cla02g00643 Cam02g0676 Cec02g0689 Cco02g0708 Clacu02g0684 Cmu02g0679 Cre02g0998 Cone12ag1066 Cone8ag1102 . . Lsi03g00540 . . . . . . Bda14g01460 . . Bma03g01369 . . . . . Cma19g00577 . Car19g00436 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010290 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00436 Car_Chr19 FPKM 28.349281 30.118217 27.676394 30.2199 26.806108 29.975075 28.456051 25.125967 27.887634 27.104963