Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00439 ATGGTGTTTCCGGCAGTCCTCCGTCGCTCTGTTATCCGACGTTCTTTCCCATCTTCCGCCGCTCCCGGCGGCGAAAGCCTCCATTTCTCAATTTTTTGTGAGCGGAAGTCCACCTTCGCCTTGAGTAGCGCCACCGAAACAGTATCCGAACAGAAAAATGAGAAGGGAAGCAATAGATGGTTCACGTTGCCTCCATTTACTGCGACTGCAAACGGCTCGGCTTTAGGTAATCGCATAATGAACGGAGGAGCTCAAGCCGAAGCAGAAACTTCCACCACGGCAATCACCGCCCTGAAATGGGTGTTCCGCTGCTGCCCGGAGCTGCCGAGGAGCCTTGTGCAGAAGCTATTTCGACTACGAAAGGTTCGACGAGGGTCTTCTATGATTGAAAATTCTGAATGTAATTTGGAAGCTCGAGACCAACTTAAAAGAGTGGCAGCCAATGACATTCTGAACATAGGTGATAAACTTTGTCTCCCCATCTCCGTTCAAGTATTTCCTACAGAGAGAGCTCCGGATTGTTGCAATAAAGAAGAAAAGAAATTCATTCATAGTCTAGTTTTATATAAGGATCCAGCTATACTTGCTATCAATAAACCTCCTGGCTTGCCCGTACAGGGTGGTATTGGCGTCAAAAGAAGTTTAGATCAATTGGCCGCCAGTTGTTTAAGTTATGACTACTCAGAGCCACCTCGGCTAGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCCACAAGTACTTCAGTTCTTCATTCTATCTTCCGTGAGAAAACTCTCGGGGCATCGAAACATGCGAACCATGTTGATAGTGAGAAAAAGATTTTGCAAAAGAGGTATTGGGCACTTGTAATTGGTTCTCCGAGACGTACAAAGGGATTGATTACGGCCCCACTAGTAAAGATGGTGTTGGACGATGGAAGATCTGAGCAAATTATGGTCATTGATAATGCTGAATCTATGCCTTTTCAGCACGCAATTACTACATATAAAGTGATCAAATCTCATCATGGTTACACTTGGTTGGAGTTGTGTCCCCTCACTGGAAGAAAACATCAGCTTCGTGTCCATTGTGCCGAGGTATTAGGAACGCCTATAGTTGGAGACTACAAATATGGATGGCAAGCACATAGAAACTGGAAACCATTTCCTCATAATTCCCACAAGAATCAAGGAAAGAAACAATCCCTTCCTTTTGGTCTTGACTTTGAAAGTGGAAGTATTGCAGAAAACAGCCCTCGCCTACACCTTCATTGTAAGCAACTGACTTTACCAGATGTTTCTTGCGCACTGCATAATGATTCTCTAGATCATGACTGCTCAAGATTGGAACGTCTGGAGTTGGATGCTCCATTGCCTTCATACATGCAAAGAAGTTGGGATATCATAAATAATTAG 1416 44.84 MVFPAVLRRSVIRRSFPSSAAPGGESLHFSIFCERKSTFALSSATETVSEQKNEKGSNRWFTLPPFTATANGSALGNRIMNGGAQAEAETSTTAITALKWVFRCCPELPRSLVQKLFRLRKVRRGSSMIENSECNLEARDQLKRVAANDILNIGDKLCLPISVQVFPTERAPDCCNKEEKKFIHSLVLYKDPAILAINKPPGLPVQGGIGVKRSLDQLAASCLSYDYSEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSIFREKTLGASKHANHVDSEKKILQKRYWALVIGSPRRTKGLITAPLVKMVLDDGRSEQIMVIDNAESMPFQHAITTYKVIKSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPFPHNSHKNQGKKQSLPFGLDFESGSIAENSPRLHLHCKQLTLPDVSCALHNDSLDHDCSRLERLELDAPLPSYMQRSWDIINN 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6142400 6146101 + Carg16361-RA Car19g00439 167406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00439 471 Pfam RNA pseudouridylate synthase 194 365 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00439 - - - cmax:111470950 919.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00417 Car-Chr5:2362636 Car19g00439 Car-Chr19:6142400 4.35E-53 dispersed
Car19g00439 Car-Chr19:6142400 Car15g00413 Car-Chr15:2148973 1.12E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g630 . . . . . . . . Cmo19g00594 . . . . . . . Cpe15g00466 . . . . . . . Cla02g00636 Cam02g0669 Cec02g0677 Cco02g0699 Clacu02g0677 Cmu02g0671 Cre02g0992 . . . . Lsi03g00533 . . . . . . . . . Bma03g01362 . . . . . Cma19g00579 . Car19g00439 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012254 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00439 Car_Chr19 FPKM 14.771568 15.448545 5.048147 4.345104 0.439628 0.535199 0.0 0.476217 0.889259 0.589472