Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00442 ATGCAGTCGCTACTCTCGCCGGTCGGTCGCGGCGGTCCCTTCCCGTCCGCCGCAGTTTATACATCGGAGTTACACCTCAGCTGTTTCAATCGTCGACCTTTCTCTGTCCGATACGCATCCAATTTCAAATCTCCTCATAATTCCCTCCCTTCATTTAGTGCAATTCGACCTCCTTCTTCTTTTTCGTTGTTGCTTTTCAAGAATTTTGGTACTCTGGAGCATAGAAGAGGACAGTTTTGCTCGGATACACGCGCTTCTTCTAGTCCCATTTCGCCGACGGTTCCCCCAAACGATGAGGCTGAAAAGGCAAAACTGGCTCAGGTGGCAAAGAGATTAGAGAAGACATCGAGGTATTTCAGGAGGTTGGGTAATCTCGGATTTTGGGGACAGTTGGTGTGCACGATTGTCGCTGCTGTTATTCTTTCATTCTCTGTTGTCGTCACCGGGAAAATTACATCACCTGCCACTTTTTATGCTACTGCTGGTGGTATTGTGGCAGCTTTCATTTCTGTATTTTGGTCCTTCGGGTACATTCGGCTTTCTGATAAACTTCAACGGACTGCAAATCAACCCTCCAAGGCTCCTCCCCGAGCCGATGTCGTGAATAGCTTAAAAAATGGAATAGTAGTGAACCTACTGGGCATGGGTGCTGCCATTCTGGGGATGCAAGCGACCGTAGGATTGTTAGTTGCTAAGGCTCTTACTTCCTCAGCAATTCCATATTACCAGGGAGCCTCCCCTGGGAATAGCCCTGTTCTTGCTTTGGATGTATTCTTAGTACAGGCTTCTGCAAACACAATTCTCTCTCATTTCCTGGGGCTCGTTTTCTCGTTGGAGCTACTGCGCTCGGTGACATTACCTGCTACTGAGAGTATTCCTATACCCCGAATGGCATAA 897 48.05 MQSLLSPVGRGGPFPSAAVYTSELHLSCFNRRPFSVRYASNFKSPHNSLPSFSAIRPPSSFSLLLFKNFGTLEHRRGQFCSDTRASSSPISPTVPPNDEAEKAKLAQVAKRLEKTSRYFRRLGNLGFWGQLVCTIVAAVILSFSVVVTGKITSPATFYATAGGIVAAFISVFWSFGYIRLSDKLQRTANQPSKAPPRADVVNSLKNGIVVNLLGMGAAILGMQATVGLLVAKALTSSAIPYYQGASPGNSPVLALDVFLVQASANTILSHFLGLVFSLELLRSVTLPATESIPIPRMA 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6154639 6160212 - Carg16364-RA Car19g00442 167409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00442 298 Pfam Protein of unknown function (DUF3611) 110 284 IPR022051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00442 - - - csv:101220179 494.967
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01117 Car19g00442 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g01117 Car-Chr11:8885157 Car19g00442 Car-Chr19:6154639 9.33E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g621 . . . . . Bpe12g00299 . . Cmo19g00596 Cmo11g01391 . . . . . Cpe04g00303 Cpe15g00468 . . . . . . . Cla02g00634 Cam02g0667 Cec02g0673 Cco02g0697 Clacu02g0675 Cmu02g0669 Cre02g0990 Cone12ag1072 Cone8ag1107 . . Lsi03g00530 . . . . . Bda15g00843 . . . Bma03g01367 Bma08g00497 . . . Cma11g01724 . Car11g01117 Car19g00442 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006867 1 1 0 2 2 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00442 Car_Chr19 FPKM 0.541021 0.735851 0.403484 0.0 2.81483 2.477654 2.368042 0.0 0.0 0.29264