Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00445 ATGGGTATCCCTTACCGGACCCATGACGAGGTTGCGGCTCTGTACGAGTCGTGGTTGGTCCATCATGGAAAAGCTTACAACGCTATCGGCGAAAAAGAGCGGCGGTTTGAGATTTTCGAGGATAATCTCAGGTTCATCAATGAACATAACCGGGAATCGCGGAGTTATAAAGTTGGATTGACTCGTTTCGCTGATCTCACCAATGATGAGTATCGGGCCATGTTTTTGGGCGGCCGATTCTCCCCAATGCCTCGCCTATCCGCCGCTAAGAGCAGTAGGTACGCGACGGCTGTCGGCGATGATCTTCCGGATCATGTCGATTGGAGAAAGAAGGGCGCTGTTACGGCTGTTAAAGATCAAGGACAGTGTGTGGATTATGTTTTGAATGAAAGGAGCTGCTGGGCTTTCTCAGCAGGGGAAGGAATAAACCAAATCGTTACTGGTGAATTAATCTCTCTGTCAGAACAGGAACTTGTGGACTGTGATAGAACATATAACATGGGTTGCAATGGTGGTCTTATGGACTATGCTTTCCAGTTCATCATTGACAATGGTGGAATCGACACCGAGAAAGATTACCCTTACAAGGCCAGTGATGACACTTGTGTTCTCGACCGGAAACATATTAAGGTTGTTGAAATAGATGGTTATGAAGATCTTCCTGAGATTGATGAGAGGTTGTTGAAAACGGCTGTGGCAGGTTAA 705 46.81 MGIPYRTHDEVAALYESWLVHHGKAYNAIGEKERRFEIFEDNLRFINEHNRESRSYKVGLTRFADLTNDEYRAMFLGGRFSPMPRLSAAKSSRYATAVGDDLPDHVDWRKKGAVTAVKDQGQCVDYVLNERSCWAFSAGEGINQIVTGELISLSEQELVDCDRTYNMGCNGGLMDYAFQFIIDNGGIDTEKDYPYKASDDTCVLDRKHIKVVEIDGYEDLPEIDERLLKTAVAG 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6186291 6187958 - Carg22079-RA Car19g00445 167412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00445 234 Pfam Cathepsin propeptide inhibitor domain (I29) 15 71 IPR013201 -
Car19g00445 234 Pfam Papain family cysteine protease 102 233 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00445 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - cpep:111776406 363.999
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01109 Car19g00445 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00562 Car-Chr12:3758179 Car19g00445 Car-Chr19:6186291 6.03E-24 dispersed
Car19g00445 Car-Chr19:6186291 Car01g01605 Car-Chr1:13208394 2.22E-72 dispersed
Car01g01420 Car-Chr1:12273242 Car19g00445 Car-Chr19:6186291 2.70E-87 wgd
Car11g01109 Car-Chr11:8810869 Car19g00445 Car-Chr19:6186291 5.01E-124 wgd
Car19g00445 Car-Chr19:6186291 Car03g00865 Car-Chr3:6942592 7.17E-96 wgd
Car19g00445 Car-Chr19:6186291 Car07g00685 Car-Chr7:3495854 6.81E-97 wgd
Car19g00445 Car-Chr19:6186291 Car09g00214 Car-Chr9:1061901 1.97E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022374 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00445 Car_Chr19 FPKM 6.618844 5.862813 6.441548 6.593739 5.760163 7.685538 6.618966 15.083701 15.597735 19.922888