Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00446 ATGGCCAAAATCTCTGCTTTTGCTTCTTTATCCATCTTTAATCTCCTCCTCTTCTCTTCCTTTTCCGCCCTCGCCCTCGACATCGGCATCGGCATCGGCATTGGCGGTGGCAGCAACTCTCCTCCGCCATCGACATCTCCCGATTGTAACACTCCTCCTCCTCCTTCTCCTCCTCCACCACGGCCTCCATCTCCACCTCCGCCATTGCCAACGAAGCCAGCACCAGCGACCTCCCCAAAACATCGTTCAAGTCCAGCACGGCAACCGACACTAAGATTCGAGAGCAAGAGAATCGAAATTGCTTATAGAGTGATTCAAAACTACAAAAGTAGAATCGAGAACGACCCATTGAAGGTCATGGCTACATGGAATGGGACCGATGTTTGCAGCTACAAAGGATTCAGGTGCGACAAATATCCGGATGCTGAAAACAAGAGGGCGGTGTCGGGGCTTAGCTTCAATAATTTCAACTTTAGTGGCTCTAAGCTCACCCTCGATGGGCTGGCCGACAAGTTGTCGGACATCGCATACTTCCATGCCAATTCCAACTTTTTCTTTGGCACCATACCCAAACTCATTGCCATGGTCAAGTTCTTGTACGAGCTCGATCTTAGCAACAATAAATTTAAGGGGTCATTCCCTAATGAAGTCCTCGGCGCTGTCAATCTCACGTTTTTGGACCTCCGATTCAATTACTATTGCGGTCCGGTCAATCCGAGGCTCTTTGATATGGACATTATCGCAGCCATCTTCCTCAACAATAATAAGTTTAATCAGAGTATCCCGGCTAACCTTGGCAACACGCCTGCTCGGTACCTGACGTTCACGAGCAACGAGTTCACCGGTGAAATCCCAAAAAGCATCGGAACCGGAAAGACAAGGAAAACCCTAATCGAGGTCCTCTTCTCCGACAACAAGCTCTCTGGCTGCTTACCGATGGAGATCGGGCAATTAGAAAACACCATTCTCTTCGATGCGAGCAAGAACACCCTCACCGGCCCGATCCCATACTCCTTTGCCTGCTTGGCCAAAATGGAGGTTCTCAACTTCGCCAACAACCGCCTATACGGCGCCGTTCCAGAGGCGGTCTGCAAGTTACCGAGCCTCCAAAACTTCACCCTTTACAACAACTTCTTGACCCAAGTCGGCCCCGTTTGCCGGAGCTTGATCGGAAGGAAAATGCTCGACGTTTCTGGAAACTGCATTTTGGGGCTGCCGGGACAGAGATCGGAGAAGGAATGTTCTTATTTCTTCAGCAAGGTTCATTCGTGTTCCGATGAGAAGTCCATGAAGTATATTCCTTGTACGGCGAATAAATACTTGTACGGCGATCCCACCGCCGGCCCACTTCCGCCGCCGAGGAAGATGACGGAGATGAGAACTTATGCCGCTCTTGTCCCCAATTGA 1407 50.25 MAKISAFASLSIFNLLLFSSFSALALDIGIGIGIGGGSNSPPPSTSPDCNTPPPPSPPPPRPPSPPPPLPTKPAPATSPKHRSSPARQPTLRFESKRIEIAYRVIQNYKSRIENDPLKVMATWNGTDVCSYKGFRCDKYPDAENKRAVSGLSFNNFNFSGSKLTLDGLADKLSDIAYFHANSNFFFGTIPKLIAMVKFLYELDLSNNKFKGSFPNEVLGAVNLTFLDLRFNYYCGPVNPRLFDMDIIAAIFLNNNKFNQSIPANLGNTPARYLTFTSNEFTGEIPKSIGTGKTRKTLIEVLFSDNKLSGCLPMEIGQLENTILFDASKNTLTGPIPYSFACLAKMEVLNFANNRLYGAVPEAVCKLPSLQNFTLYNNFLTQVGPVCRSLIGRKMLDVSGNCILGLPGQRSEKECSYFFSKVHSCSDEKSMKYIPCTANKYLYGDPTAGPLPPPRKMTEMRTYAALVPN 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6192217 6194193 + Carg22078-RA Car19g00446 167413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00446 468 MobiDBLite consensus disorder prediction 35 90 - -
Car19g00446 468 MobiDBLite consensus disorder prediction 45 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00446 - - - csv:101217723 591.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00526 Car-Chr12:3470975 Car19g00446 Car-Chr19:6192217 1.37E-98 dispersed
Car19g00446 Car-Chr19:6192217 Car10g00558 Car-Chr10:2821826 1.67E-78 dispersed
Car19g00446 Car-Chr19:6192217 Car19g00447 Car-Chr19:6195901 1.64E-159 tandem
Car01g01423 Car-Chr1:12285343 Car19g00446 Car-Chr19:6192217 3.39E-87 wgd
Car11g01104 Car-Chr11:8687840 Car19g00446 Car-Chr19:6192217 0 wgd
Car12g00521 Car-Chr12:3441028 Car19g00446 Car-Chr19:6192217 2.21E-47 wgd
Car16g00313 Car-Chr16:1916427 Car19g00446 Car-Chr19:6192217 2.29E-102 wgd
Car19g00446 Car-Chr19:6192217 Car04g00448 Car-Chr4:2535665 1.01E-130 wgd
Car19g00446 Car-Chr19:6192217 Car05g00142 Car-Chr5:711003 8.66E-104 wgd
Car19g00446 Car-Chr19:6192217 Car09g00211 Car-Chr9:1048244 1.55E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g378 Blo02g00837 . . . . Bpe12g00047 . . Cmo19g00607 Cmo11g01379 . . . . . Cpe04g00293 Cpe15g00477 Bhi05g01086 . . . . . . Cla02g00623 Cam02g0657 Cec02g0660 Cco02g0683 Clacu02g0665 Cmu02g0660 Cre02g0978 . Cone8ag1115 Cone3ag0990 Cone10ag1008 . Csa07g00736 . Cme01g00072 . . . . . . . Bma08g00812 . . . . Cma19g00588 . Car19g00446 . . . . . . . . . . . . . . . . . . Chy01g00078 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000853 1 2 2 1 2 3 4 3 3 3 3 3 5 3 3 5 3 6 4 3 3 2 1 4 4 4 2 4 3 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00446 Car_Chr19 FPKM 2.441431 2.14175 1.272492 1.53129 2.915092 2.457794 2.590135 5.038985 4.858355 5.706469