Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00450 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGCGCCGACCCGGCTGCCAATGGAGGCGGACAGCATGTGACGACGTCGTTGTATGTTGGAGATCTTGACGTGAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGACAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACGACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTGGATGCTTCAAGGGCATTGGATGTGCTAAACTTCACCCCTTTGAATGGGAATCCTATTAGAGTCATGTATTCGCATCGTGACCCTAGCATGCGGAAGAGTGGGTCTGGAAATATTTTTATCAAGAATTTGGACAAGGCAATTGATCACAAAGCGTTGCACGATACATTCTCTGCATTTGGAAACATTCTCTCCTGCAAGGTTGCTACAGATTCGTCTGGGCAGTCTAAAGGCTTTGGTTTCGTACAATTTGATACTGAGGAAGCTGCCTTAAAAGCTATAGAGAAGTTGAATGGTATGCTGCTCAACGACAAGCAGGTGTTCGTGGGACCGTTCCTTCGCAAGCAAGAAAGAGAAAGTGTCAGTGAGAAAACAAAATTTAACAATGTTTTTGTTAAGAATTTAGCAGAAACTACATCTGAAGAAGAATTGAGGAATATGTTTGGGGAGTTTGGACCAATTACCAGCGTTGTGGTCATGAGGGATGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTGAACTTTGAAAATGCGGACGATGCTGCTAGATCTGTTGATGCTCTCAATGGACACAAGGTTGATGGGAAAGAGTGGTACGTTGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAGAATCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATCTAGATGATACCATCGACGATGATAAACTGAAGGAGTTATTCTCTGCGTTTGGAACCATTACCTCATGCAAGGTTGTTATGCGTGATCCCAATGGACTGAGTAGAGGGTCTGGCTTTGTTGCGTTCTCAACTCCTGAAGAGGCTTCTAGAGCTCTTGGAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCCCAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCGATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTTTATGGACAAGCTCCACCTACTATTATTTCATCACAGCCTGGATTTGGTTATCAGCAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCGATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGAAGGCGAGCTGGTGCTATTCAGCAAACCCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGGCGTGGACTGCCTGATCTTCCCATGCCGGGTGTTGCTGGAGGTATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGGGATGCTGTCCACCCTCAACCAGTTCCTGTTGGCGCTTTGGCTTCTGCCCTTGCAAATTCAACTCCAGACCAGCAGAGAACGATGCTTGGGGAGAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCACCGGAAGCTCTGAAGGCGAAGGTTGCCGAGGCCATGGAGGTTTTAAGAAGTGTTGCTCAGCAGACGGGCAATGCAGCTGCTGATCAGTTGGCTTCATTATCCCTGACTGACAACCTTGATTCCTAA 1953 47.31 MAQVPPQPQVPNSGADPAANGGGQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEELRNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKNRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVVMRDPNGLSRGSGFVAFSTPEEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANSTPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAAADQLASLSLTDNLDS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6228990 6232906 + Carg22074-RA Car19g00450 167417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00450 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Car19g00450 650 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Car19g00450 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Car19g00450 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Car19g00450 650 MobiDBLite consensus disorder prediction 1 22 - -
Car19g00450 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Car19g00450 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 388 IPR000504 GO:0003723
Car19g00450 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 185 IPR000504 GO:0003723
Car19g00450 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Car19g00450 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 381 IPR000504 GO:0003723
Car19g00450 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02381 Car-Chr4:19080168 Car19g00450 Car-Chr19:6228990 0 dispersed
Car06g01369 Car-Chr6:9845147 Car19g00450 Car-Chr19:6228990 2.48E-24 dispersed
Car15g00530 Car-Chr15:2873752 Car19g00450 Car-Chr19:6228990 0 dispersed
Car19g00450 Car-Chr19:6228990 Car09g00180 Car-Chr9:913225 6.24E-13 dispersed
Car11g01101 Car-Chr11:8668681 Car19g00450 Car-Chr19:6228990 0 wgd
Car16g00315 Car-Chr16:1929225 Car19g00450 Car-Chr19:6228990 7.64E-46 wgd
Car19g00450 Car-Chr19:6228990 Car20g00769 Car-Chr20:4526621 2.35E-12 wgd
Car19g00450 Car-Chr19:6228990 Car04g00450 Car-Chr4:2548265 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00450 K13126 - csv:101223017 1168.68