Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00451 ATGGATTCGTCCAAGTTCGAGACGGATGAACCACTGACGCCGGCCGGACGACTCTTTCTCCGTCCTGAAATTAACCAGATTATTCACTGCGTTATCGGAGTGCGGGACTTGATTGATGTCGATTCGGTTAAATCTCAAATCGCTGGTTCCGTAATGGTTCAGCATCCTAGGTTTTCGAGTCTTCTTGTTCGTGACCAGAATGGAGTTGAGTACTGGCGGAGGACTTCTATTGAAGTCGACCGTCACGTCATTGTTGTTGCTGAACCTGTATTGGACGATGGAGCCAGCGATGAGAAGGCGGTGAATGAGTATTTGGCTGATTTAGCGATTAATTCGTCGATGGATGCCGATAAGCCTCTTTGGGAGATTCATTTGCTTTTGGCGCATAAGTGCGCGATCTTCCGAATCCACCACGCGCTTGGCGACGGGATCTCGTTGATGTCGATGTTCTTGACGTGTTGCCGACGGGCAGACGATCCGAATGCTCTGCCGACGATCGTTTTGGATTCGAGGTCAGCGAGGAAAACCAGGCGGTGGAGGTGGGCGGAGGAAATACCGAAAACGTTGTTGGCGGTGTGGTTTAACTTCCTGTTTGTGGTGGAGTTTATACTTCGGGCTCTGTGGGTTTCTGACCGGAAATCGCCGATCTCCGGCGGGGATGGGGTGGAGCTCTGGCCGAGGAAAATGGCGACGGCGAAATTCGCGGTGGAGGATATGAAAGCGGTGAAGAAAGCGGTTGCTAACGTGACAATGAACGATGTTCTTTTCAGCGTGATCGGAGCAGGCTTATCGAGATACTTGGAGCATAGGCAACCCAAGGGTTTGAAAGAAGGGCTTCAGTTAACCGGAGTAGCTATGGTTAACCTTAGAGAACAACGGGGATTACAGGAATTAACTGAAATGATGAAAGGAAATAGGGGATTTGGATGGGGTAATAAGTTAGGGATTCTTCTCCTTCCCGTGAACTACGAGAAGAAAACACTTGATCCTCTTCAATGTGTCATGAGAACAAAGAAGATGCTTGACCGAAAAAAACGTAGTTTTGAAGCTCATTTTTCATATGGAGTTGGCAAGTTCATAATGTCATGTTTGGGACCAAAAGTAGCTTCCATCCTTAATTATAGGATTGTTTGCAATACAAGTTTCACCATCTCCAATGTGATTGGCCCAAGAGAAGAGATTACCATTGGAGGCAATCCCATTACATACATAAGAAGCACTTCAACAAGCTTGCCCCATACAATTACGATGCATATGGTGAGCTATGCTGGAAGAGCTGAAATGCAAATTCTAGTGGCGAAAGATATCATTCCCGATCCTGAATTTCTTGCTGAATGCCTTGAAAATGGCAAGATTGGAATAAAGCAACCTTCACTTCTTCGAGACTTTCTTCTTCTCCCTTTCGGCGAGGCCCTGCGGAATACGGGGGAAGAAGTACGTCATCGGCTCCGACGACTTTTAAGCTGCCTTATTTCGGCGACTCGCGGTGGTCCTTCGTGCCTTCGTTTACACCGTCACCTAGCAATGGAGATTGCGCCGGTGGCCGCGTCTTCGATCGACAGAGATGCTGTTAACGATGCCGCTTCTGTTGATGCAGTTCAAGCATCGTCTTCGTCGCCGGATTCTGTACCAGGGAAAGAGGCGAACTTGTCCACGTCTTTTCCCGGACCTAAGTATGACGATGATGAAGAGGAAGAGGACGTCTGCCGGATCTGTAGGAACCCTAGAGATGCGGATAATCCGCTAAGTTATCCTTGCGCTTGCAGCGGCAGCATCAAGTTTGTTCACCAGGATTGTCTCCTTCAATGGCTGAATCACAGCAACGCCCGTCAGTGCGAGAGAAACATTTGGGACTTCTTATATGGGAGCGATATTGGGGATGACATTAGCGAGTTACTGAATGAACTTGGAACAGATTTAGACCTGTGGAAATTCGACCTGAATCTCTTAAACAAAGTTTGCAAACATGCATTTTCCTTCTCCCCTGTTTATGCTGAGAATGCTCCATCAAGGCTACCTTTTCAGGAATTTATTTTTGGAATAGCAATGAAAGCTTGCCATGTCCTGCAATTCTTTTTACGTCTCAGTTTTGTGCTTTCTGTTTGGCTCCTCATCATACCTTTCATTACGTTTTGGATATGGCGGCTGGCTTTCGTGAGGAGTTTTGGGGAAGCCCAGAGATTATTCTTGAGTCACTTGTCTGCTACCGTTGTTCTTACTGATTGTCTTCATGGCTTCCTACTTTCTGCTAGCATTGTATTTATATTTCTTGGAGCTACCTCCTTGAGAGATTACTTCAGGCATTTACGGGAGCTTGGAGGTCCGGAGGGCGAGCGAGAAGATGATGCAGATAGAAATGGAGCTCGTGCTGTAAGAAGACCTCTGGGACAAGCTAATAGAAATTTTGCTGGTGATGCAAATGGTGAAGATGCGGGTGGAGGCCAAGTCCTTGCTGGAGCAGGTCAAATAATTAGGAGGAATGCGGAAAATGTTGCTGCTCGGTGGGAGATGCAAGCTGCTCGTCTTGAGGCTCATGTCGAACAGATTTTTGATGTGGATGATGCTGATGGTGCAGAAGATGTGCCTTTCGATGAGCTTGTTGGCATGCAGGGTCCTGTTTTAGCCAGCAATATGATATTTCTTGGTGTTGTTATCTTTGTGCCCTTTACATTAGGTCGGATCATACTTCATTACATATCATGGCTTTTCTCTTCAGCCAGTGGTCCAGTTTTCTCGACGGTGATGCCATTTACGGAGTCAGCTCTCTCCTTGGCAAATATCACATTGAAAAATGCATTGACAGCTGTTGCAAATTTGTCATCAGATGGTAAAGAAAGTGGTCTACTTGATCAGGTTGCAGAAATGTTGAAAGTCAACTCCAGTACACTAAACAATGTCTCAAACAACATAACTGCTCCACTTTCGGTGGATCTTTTGGAACGGGCAGCTACTGGAACATCGAGGCTTTCTGATGTTACAACTCTTGCTGTAGGCTACATATTTATATTTTCTTTAGTTTTCTTCTATCTTGGGACTATTGCTTTGATTCGATATACTCGAGGAGAGCCTTTGACTATGGGAAGGTTGTATGGCATCGCATCTGTCGCCGAAGCCATCCCCTCTCTCCTTAGGCAGTTCATGGCAGCGATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTTTTGGTCATAGAACTTGGGGTATTTCCCTTGATGTGTGGTTGGTGGCTTGACATTTGTACTGTTAGGATGTTTGGAAAGTCAATGGCTCAGCGCGTTCAGTTCTTTTCAATTTCTCCTCTAGCAAGCTCATTGGTTCACTGGGCTGTTGGCATTGTATATATGCTACAAATAAGCATATTTGTCAATCTTCTTCGAGGGGTTTTGCGCAGTGGAGTTTTGTATTTTCTTCGTGATCCAGCTGATCCAAATTATAATCCTTTCCGAGATTTAATTGATGATCCAATGCACAAGCATGCTCGCAGGGTTCTTCTATCTGTTGCAGTGTATGGAAGTTTAATTGTAATGCTGGTGTTCTTACCTGTCAAACTTGCTATGAGGATGGTTCCCTCCATTTTTCCTCTTGATATATCGGTATCGGACCCCTTCACAGAGATTCCAGCTGACATGCTTCTCTTTCAAATCTGCATTCCTTTTGCTATTGAGCATTTTAAATTGAGAACAACAATCAAATCCCTTCTCCACTGCTGGTTTACTGTGGTTGGTTGGGCCCTTGGATTAACAGATTATTTACTTCCCAGAACTGAAGAAAACGTTGGCCAGGAAAATGGGAATGGAGAGCAGCCTGGGTTGCAAGAAGAACTGCAGGTGGTACGTCTAGGTGCCCTGGAACAGGCTTTGGTGGCCCATGCCGCAGCTAACGAGCCAAACCAAGTTGTTCCTGCATCTGGGAACTTGACTAACGAGGAGTATGATAACGAAGAGCAGTCTGATTCAGAGAGGTATAGCTTCGCTCTCCGCATTGTCCTTTTGTTGGTTGTGGCATGGATGACTCTTCTTGTCTTCAACTCAGCATTGATAGTGGTACCAACATCACTTGGACGGGCACTTTTCAACGCCATTCCGCTTCTTCCCATCACACATGGTATCAAGTGCAACGATATGTATGCTTTTGTCATCGGGAGCTACGTTATTTGGACGGTGATAGCTGGTGCCAGATATTCCATTGAATATGTTAAAGCAAGGAGGGTGACTGTTTTATTGGGCCAGATATGGAAATGGTTTGCCATTGTCGTCAAGAGTTCTGCACTTCTGTCAATTTGGATCTTCCTCATTCCAGTATTGATTGGCTTGTTATTTGAGCTTCTGGTCATTGTGCCTATGCGAGTTCCAGTGGATGAAAGCCCAGTTTTCCTCTTGTATCAGGACTGGGCATTGGGCTTAATTTTTCTTAAGATCTGGACTAGACTGGTAATGTTAGATCATATGATACCTCTGGTGGATGATAGTTGGAGAGTGAAGTTTGAAAGAGTTAGAGAAGATGGCTTCTCCAGGCTGCAAGGGTTCTGGGTTTTGAGGGAAATAGTTGTTCCAATCATAATGAAGCTACTGACAGCACTATGCGTACCGTACGTACTAGCTAGAGGAGTGTTTCCTGTGCTCGGCTACCCGCTGATTGTCAACTCAGCTGTTTATCGATTTGCTTGGATTGGATGCCTTTGTGTTAGCATGTTGTGTTTTTGTGCCAAGAGATTTCATGTATGGTTCACCAACCTTCACAATTCCATTCGCGACGATCGTTATCTCATCGGTCGTCGACTCCATAACTTCGGTGAAGACTCTGGAGAGAAGCAAAGAGATGTGGGGACTTCGTCCGAGACACAAGATGTTCTGCTGGGCACCGCCCATGCAGCAGCAGCTGGGGAAGGATTGCGGCAGAGACATGTTGTTGCTAACTGA 4923 45.85 MDSSKFETDEPLTPAGRLFLRPEINQIIHCVIGVRDLIDVDSVKSQIAGSVMVQHPRFSSLLVRDQNGVEYWRRTSIEVDRHVIVVAEPVLDDGASDEKAVNEYLADLAINSSMDADKPLWEIHLLLAHKCAIFRIHHALGDGISLMSMFLTCCRRADDPNALPTIVLDSRSARKTRRWRWAEEIPKTLLAVWFNFLFVVEFILRALWVSDRKSPISGGDGVELWPRKMATAKFAVEDMKAVKKAVANVTMNDVLFSVIGAGLSRYLEHRQPKGLKEGLQLTGVAMVNLREQRGLQELTEMMKGNRGFGWGNKLGILLLPVNYEKKTLDPLQCVMRTKKMLDRKKRSFEAHFSYGVGKFIMSCLGPKVASILNYRIVCNTSFTISNVIGPREEITIGGNPITYIRSTSTSLPHTITMHMVSYAGRAEMQILVAKDIIPDPEFLAECLENGKIGIKQPSLLRDFLLLPFGEALRNTGEEVRHRLRRLLSCLISATRGGPSCLRLHRHLAMEIAPVAASSIDRDAVNDAASVDAVQASSSSPDSVPGKEANLSTSFPGPKYDDDEEEEDVCRICRNPRDADNPLSYPCACSGSIKFVHQDCLLQWLNHSNARQCERNIWDFLYGSDIGDDISELLNELGTDLDLWKFDLNLLNKVCKHAFSFSPVYAENAPSRLPFQEFIFGIAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSATVVLTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGPEGEREDDADRNGARAVRRPLGQANRNFAGDANGEDAGGGQVLAGAGQIIRRNAENVAARWEMQAARLEAHVEQIFDVDDADGAEDVPFDELVGMQGPVLASNMIFLGVVIFVPFTLGRIILHYISWLFSSASGPVFSTVMPFTESALSLANITLKNALTAVANLSSDGKESGLLDQVAEMLKVNSSTLNNVSNNITAPLSVDLLERAATGTSRLSDVTTLAVGYIFIFSLVFFYLGTIALIRYTRGEPLTMGRLYGIASVAEAIPSLLRQFMAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDICTVRMFGKSMAQRVQFFSISPLASSLVHWAVGIVYMLQISIFVNLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMVPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLHCWFTVVGWALGLTDYLLPRTEENVGQENGNGEQPGLQEELQVVRLGALEQALVAHAAANEPNQVVPASGNLTNEEYDNEEQSDSERYSFALRIVLLLVVAWMTLLVFNSALIVVPTSLGRALFNAIPLLPITHGIKCNDMYAFVIGSYVIWTVIAGARYSIEYVKARRVTVLLGQIWKWFAIVVKSSALLSIWIFLIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMIPLVDDSWRVKFERVREDGFSRLQGFWVLREIVVPIIMKLLTALCVPYVLARGVFPVLGYPLIVNSAVYRFAWIGCLCVSMLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDSGEKQRDVGTSSETQDVLLGTAHAAAAGEGLRQRHVVAN 1640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6233252 6242873 - Carg22073-RA Car19g00451 167418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00451 1640 Coils Coil 825 845 - -
Car19g00451 1640 MobiDBLite consensus disorder prediction 530 562 - -
Car19g00451 1640 ProSiteProfiles Zinc finger RING-CH-type profile. 561 622 IPR011016 GO:0008270
Car19g00451 1640 Pfam RING-variant domain 569 613 IPR011016 GO:0008270
Car19g00451 1640 MobiDBLite consensus disorder prediction 530 549 - -
Car19g00451 1640 Pfam Wax ester synthase-like Acyl-CoA acyltransferase domain 71 254 IPR004255 GO:0004144|GO:0045017
Car19g00451 1640 Pfam WS/DGAT C-terminal domain 310 449 IPR009721 GO:0004144
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00451 K10661 MARCH6, DOA10; E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27] - csv:101222781 1934.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00451 Car-Chr19:6233252 Car17g00276 Car-Chr17:1704183 7.74E-10 dispersed
Car11g01100 Car-Chr11:8662936 Car19g00451 Car-Chr19:6233252 0 transposed
Car16g00844 Car-Chr16:6151716 Car19g00451 Car-Chr19:6233252 0 transposed
Car11g01099 Car-Chr11:8642926 Car19g00451 Car-Chr19:6233252 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g388 . . . . . . . . Cmo19g00616 Cmo11g01374 . . . . . Cpe04g00288 Cpe15g00482 Bhi05g01073 . . . . . . Cla02g00610 Cam02g0640 Cec02g0638 Cco02g0660 Clacu02g0644 Cmu02g0639 Cre02g0963 . . Cone3ag1187 Cone10ag1000 . Csa07g00749 . Cme01g00059 Blo04g00483 Blo13g00580 . Bda14g00511 Bpe15g00901 . Bma03g00513 . . . . Cma11g01741 Cma19g00598 . Car19g00451 . . . . . . . . . . . . . . . . . . Chy01g00062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005956 2 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00451 Car_Chr19 FPKM 1.149866 0.691908 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0