Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00453 ATGCCAACAGGAGAAGGCATCATGGCTAAGACACAAGGAAATTTCACATTAACCAGACAACCTTCCATATACTCTTTAACCTTTGATGAATTTCAGAACACATGGAATGGACTTGGAAAGGATGTTGGTTCAATGAATATGGATGAACTTCTAAAGAACATATGGACAGCAGAAGAGTCTCAGGCAATGACATCTACAGCTGCTGCTGTGGGTGGAGCTGGAAGCACCAATGGTGGGAACTTGCAGAGACAAGGTTCATTAACATTACCACGGACCATTAGTCAAAAAACGGTTGATGAAGTTTGGAAAGACTTGAGCAAAGAGGGGGGAAGTGGAGTCGAGGCAACGCCTCGACGACAACCGACGTTAGGGGAGGTGACATTGGAGGAGTTCTTAGCTAGAGCTGGAGTGGTAAGAGAGGAGCCTCGACGTGTCGAGGAGCGGCCGTTTAGCTGTGGATTTTTTGGTGGATTGTCAAGAGATGACAACAATGCTAGCTTGGCTCTTGGGATGTTCATGGAAAATCAGATAGCTGAGAACAAAAACAATGCTGGTTTGGCTCATGGGATGTTAAGGGCAGGAGCTGTAAGGTCTCCTCAGCAGCAGCAGCAGCCACTTTTTCCCAAACCAGCTACTGTGACCTTTGCTTCTTCAATGAATTTAGTGAACAATCATCCACAGCATTCTACTGGAGCTGCTACTAATTTGGTTGTGGCTCCCAAACCTTCTTTATATGATCCTTTACTTCAGGGCAGCGGCGTCGGTGCGGTCGGTTTAGGCACGGGAGGTGTAACTGTTGCTTCAAGATCTCCTACAAGCACAATATCATCTGACATGATTACAAAAAACAGCATATCTACATCTTCATTTTCACCGGTTCCATATTCGTTTGGTCGGGGAAGGCGAAGCGGTGGAGCGTTGGAGAAAGTAGTCGAGAGGAGGCAACGACGAATGATAAAGAACCGAGAGTCGGCTGCAAGATCACGGGCTCGTAAACAGGCATACACCTTAGAACTTGAAGCAGAAGTTGCAAAACTCAAAGAAATGAACCAAGAATTGCAGAAGAAACAGAGAGAGATAATGGAAACCCAGAAAGATCAGGTTTTGGAGAAGATGAAATGTCATTTTGGTGCCAAAAGGCTCTGCTTAAGAAGAACACTGACAGGCCCTTGGTAG 1176 45.83 MPTGEGIMAKTQGNFTLTRQPSIYSLTFDEFQNTWNGLGKDVGSMNMDELLKNIWTAEESQAMTSTAAAVGGAGSTNGGNLQRQGSLTLPRTISQKTVDEVWKDLSKEGGSGVEATPRRQPTLGEVTLEEFLARAGVVREEPRRVEERPFSCGFFGGLSRDDNNASLALGMFMENQIAENKNNAGLAHGMLRAGAVRSPQQQQQPLFPKPATVTFASSMNLVNNHPQHSTGAATNLVVAPKPSLYDPLLQGSGVGAVGLGTGGVTVASRSPTSTISSDMITKNSISTSSFSPVPYSFGRGRRSGGALEKVVERRQRRMIKNRESAARSRARKQAYTLELEAEVAKLKEMNQELQKKQREIMETQKDQVLEKMKCHFGAKRLCLRRTLTGPW 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6249930 6253059 + Carg22071-RA Car19g00453 167420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00453 391 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 316 331 IPR004827 GO:0003700|GO:0006355
Car19g00453 391 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 311 362 IPR004827 GO:0003700|GO:0006355
Car19g00453 391 Coils Coil 332 366 - -
Car19g00453 391 MobiDBLite consensus disorder prediction 66 88 - -
Car19g00453 391 Pfam bZIP transcription factor 313 363 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g01097 Car19g00453 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g00277 Car-Chr14:1334801 Car19g00453 Car-Chr19:6249930 5.91E-57 dispersed
Car19g00453 Car-Chr19:6249930 Car20g00146 Car-Chr20:799484 1.99E-15 dispersed
Car11g01097 Car-Chr11:8627343 Car19g00453 Car-Chr19:6249930 0 wgd
Car12g00510 Car-Chr12:3385224 Car19g00453 Car-Chr19:6249930 8.02E-81 wgd
Car19g00453 Car-Chr19:6249930 Car05g00153 Car-Chr5:769103 8.68E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5269 PF00170 bZIP_1 4.30E-12 CL0018 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00453 K14432 - csv:101203950 578.941