Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00454 ATGGTAGACGCTCATACGCCGTCGTCCATGTCGACGCCGGTTGCAGATCGAGAATCACCCATGTCGGTCTCTGCTAGCGACTTGACTCGTTTGAACTCCGAATCCTACTCTTCTTCCAATACCGTTGATGCGTCCGAGGGGGATTTGCCTTTGATGCCTTCTCATCATTGTTTTCAACTGGATGCGGTGCAAACACATTGGACAGAAGAGAAACACAGATTATTTCTTGATTCTTTAGAAGCATCTTTTGTCCAAGATTTGCATCGATATAGGCATCTTCGTGCTTTGTCCTCGAAACAGAAAATGCGTCGGAAGCCGATCATGCCTAATATATCTTCTTCAGAGGTGAGGCAATACATCCACAGCAAGAGTGGGAGTGAGTTCCCTATATCATTCCTCTACTCGATGGTCCTTCAGGATGCCTCCTGGCAGAAGGCTAACGTTGGGAGAACTGATCCTTTATTGGATAAGACTGCCGATTCTCCCGCTATTTTAGAGGATGTATGGATAAATCATTTCCCTTCTGCAGGAAATCAGTGTACTCTGGAAACTACTGATGTTCTTGAAGAATGTGGAAGTTGTAGTGATAGGAGTCACATAAGAAACAAGACAAACTCCCGTCAATCTGCCAGAAGTTCTCAGCAGATTCCTCCATGCTGTCGTGATTCTCATACAATCGTTACAGAAGTTTCAGATCAAAACTTTGTGGATACTCATCCAGGAGAGTTGTCTGATGGCACGCCCATTACAAAACGATTAAAGAAAGCTTCCTCTGATTCTTCAGGCAACAACCGGGTAAAACTCGGGATTGCCATTGATTTCTCTTTGGAGAACCAATAA 840 44.52 MVDAHTPSSMSTPVADRESPMSVSASDLTRLNSESYSSSNTVDASEGDLPLMPSHHCFQLDAVQTHWTEEKHRLFLDSLEASFVQDLHRYRHLRALSSKQKMRRKPIMPNISSSEVRQYIHSKSGSEFPISFLYSMVLQDASWQKANVGRTDPLLDKTADSPAILEDVWINHFPSAGNQCTLETTDVLEECGSCSDRSHIRNKTNSRQSARSSQQIPPCCRDSHTIVTEVSDQNFVDTHPGELSDGTPITKRLKKASSDSSGNNRVKLGIAIDFSLENQ 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6259133 6261816 + Carg22070-RA Car19g00454 167421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00454 279 MobiDBLite consensus disorder prediction 1 48 - -
Car19g00454 279 MobiDBLite consensus disorder prediction 196 218 - -
Car19g00454 279 MobiDBLite consensus disorder prediction 1 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00454 - - - cmax:111470946 479.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01432 Car-Chr1:12358542 Car19g00454 Car-Chr19:6259133 6.64E-09 wgd
Car11g01092 Car-Chr11:8605630 Car19g00454 Car-Chr19:6259133 1.70E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g407 . . . . . . . . Cmo19g00619 . . . . . . Cpe04g00282 Cpe15g00485 Bhi05g01066 . . . . . . Cla02g00603 Cam02g0632 Cec02g0632 Cco02g0651 Clacu02g0636 Cmu02g0632 Cre02g0956 . . . . . . . Cme01g00053 . . . . . . . . . . . Cma11g01747 Cma19g00601 . Car19g00454 . . . . . . . . . . . . . . . . . . Chy01g00057 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006108 0 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00454 Car_Chr19 FPKM 1.804249 1.957404 57.230255 49.614723 273.345947 299.992737 286.190704 7.257016 7.450254 8.061215