Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00455 ATGGGTATGTTTTCAAAGCCAAAAATCTGTAGAACAGGAACGACCCATAATGATTCGATGGGTTTTAATGGGGTTTCTCCAGCAAGCAAGTGGAAATGGACCCATTTCTTGCCTCTGTTTGTAGCGATGGTGGTCATAGCAGAGTTCGCTTCTCTAAGTCGGCTCGACATCGCGAAAAATGCGGCTATGGTGGACTCTTGGGTCGACTTATTCTATGGGCCTCCGCCTTTGCACGAAGAAATCGAAGATGTTAGCACTGGAATCACAATTGATGGAGTAATGGGTAGAGTTAACTGTGAGGAGTGGCTGGAGAAGGTGGATGCGGTGGAGTACTCTAGGGACTTCAAAAGGAAACCTGTTTTGGTTTCTGGGTCCGAGAAGGATTGGAAAACTTGTGATGTGGGATGCCAGTTTGGATTGAATCCTGGTGAGCAGCCTGATGCTGCATTGGGATCACCTCAACAAGGTCGTGTTGCTAGCGTCCTTCGGTCGATGGAATCGTCGCATTACTATCCAGAGAACAATATTGATTTGGCAAGACGGAAGGGTTACACTGTGGTTATGACCACTAGTCTTTCATCAGACGTTCCTGTTGGATATTTTTCGTGGGCAGAATACGACATAATGGCACCAGTGCAACCAAAGACGGAGCCTGCCCTTGCAGCTGCCTTCATTTCGAATTGTGGCGCCCGCAACTTTCGTTTGCAAGCTCTTGAAGCACTTGAGAAATTGGATGTCAAAATTGATTCATATGGTAGTTGCCACAGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTCGAGAATTCCAATGAGGAAGATTATGTCACAGAAAAGTTTTTTCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTGGGTACTCCAAATATAAAGGAGTTTGCTCCTTCTCCTGATTCATATTTGCATATCAAGGAAATTTCCGATGTCGAGTCGGTTGCCAAGTCCATGAAACACCTCGCAGAGAATCCCAAAATGTACAATCAATCACTAAGATGGAAGTACGATGGTCCATCCGATTCGTTCAAGGCCCTTGTCGATATGGCAGCAGTACACTCATCGTGTCGCCTTTGCATCCATTTGGCAACCATCATCCACGAGAAAGAAGAAACCAGTCCCGAGTTCAAGAAACGACCGTGCAAGTGCTCTCGTGGCTCCGAAACGGTTTATCATTTATACGTAAGGGAGAGAGGGCGGTTCGAAATGCAATCCATTTTCTTGAGGTCGGGAAATTTAACGTTGGAGGCTTTAGAATCGAGAGTACTCGAAAAGTTCAAGTCTTTGAAACATGTCCCAATTTGGAAGCAAGAACGACCTGAAAGCTTAAGAGGAGGAGATGAACTTAAGCTATATAGGATATATCCAGTTGGGTTGACACAGAAGCAGGCTTTATATACCTTCAGATTCAAAGGTAATGATGATTTCAAAACTCACATAGAAACACACCCTTGTGCTAAGATGGAAATCATATTTGTCTGA 1530 44.84 MGMFSKPKICRTGTTHNDSMGFNGVSPASKWKWTHFLPLFVAMVVIAEFASLSRLDIAKNAAMVDSWVDLFYGPPPLHEEIEDVSTGITIDGVMGRVNCEEWLEKVDAVEYSRDFKRKPVLVSGSEKDWKTCDVGCQFGLNPGEQPDAALGSPQQGRVASVLRSMESSHYYPENNIDLARRKGYTVVMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEPALAAAFISNCGARNFRLQALEALEKLDVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGTPNIKEFAPSPDSYLHIKEISDVESVAKSMKHLAENPKMYNQSLRWKYDGPSDSFKALVDMAAVHSSCRLCIHLATIIHEKEETSPEFKKRPCKCSRGSETVYHLYVRERGRFEMQSIFLRSGNLTLEALESRVLEKFKSLKHVPIWKQERPESLRGGDELKLYRIYPVGLTQKQALYTFRFKGNDDFKTHIETHPCAKMEIIFV 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6263774 6270012 + Carg22069-RA Car19g00455 167422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00455 509 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 219 381 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00455 K00753 E2.4.1.214; glycoprotein 3-alpha-L-fucosyltransferase [EC:2.4.1.214] - csv:101205170 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00318 Car-Chr16:1954005 Car19g00455 Car-Chr19:6263774 0 wgd
Car19g00455 Car-Chr19:6263774 Car04g00457 Car-Chr4:2592261 1.01E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g408 Blo02g00831 Blo15g00748 Bda06g01072 Bda08g00885 . . Bma05g00514 . Cmo19g00620 . . . . . . . Cpe15g00486 Bhi05g01063 . . . . . . Cla02g00602 Cam02g0631 Cec02g0631 Cco02g0650 Clacu02g0635 Cmu02g0631 Cre02g0955 . . Cone3ag1179 Cone10ag0987 . Csa07g00757 . Cme01g00052 . . . . . . . . . . . . Cma19g00602 . Car19g00455 Cpe14g00294 Cpe01g00439 . . . . . . . . . . . . . . . . Chy01g00056 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car04g01713 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.8 9.7e-154 540.8
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 3.5e-151 532.3
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 4.2e-149 525.4
Car04g01713 . 81 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.0 8.4e-163 570.9
Car13g00974 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 2.3e-160 562.8
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 2.0e-156 549.7
Car04g01713 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 7.3e-137 484.6
Car13g00974 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.3e-133 473.8
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 5.6e-183 637.9
Car15g00517 . 7 398 Xyloglucan Fucosyltransferase1 AT1G71990 68.2 2.5e-162 568.9
Car04g02390 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 67.1 7.5e-159 557.4
Car04g01713 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.4 1.6e-183 639.8
Car13g00974 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.7 4.3e-168 588.6
Car01g00737 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 2.6e-165 579.3
Car04g01713 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 5.9e-202 701.0
Car01g00737 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 6.9e-187 651.0
Car13g00974 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 65.1 5.0e-185 644.8
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.3e-151 532.3
Car13g00974 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 1.2e-145 513.8
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 9.1e-144 507.7
Car13g00974 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.3e-139 493.0
Car04g01713 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.8 4.2e-149 525.4
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 52.1 3.5e-143 505.8
Car01g00737 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 9.4e-141 497.7
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 2.5e-188 655.6
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.2e-183 638.6
Car04g01713 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.4 1.6e-183 639.8
Car13g00974 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.7 4.3e-168 588.6
Car01g00737 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 2.6e-165 579.3
Car04g01713 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 5.9e-202 701.0
Car01g00737 . 51 580 Xyloglucan Fucosyltransferase1 AT2G03220 58.8 6.9e-187 651.0
Car13g00974 . 119 585 Xyloglucan Fucosyltransferase1 AT2G03220 65.1 5.0e-185 644.8
Car04g01713 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 56.4 1.6e-183 639.8
Car13g00974 . 13 586 Xyloglucan Fucosyltransferase1 AT2G03210 51.7 4.3e-168 588.6
Car01g00737 . 111 583 Xyloglucan Fucosyltransferase1 AT2G03210 57.9 2.6e-165 579.3
Car04g01713 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.8 4.2e-149 525.4
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT2G15390 52.1 3.5e-143 505.8
Car01g00737 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.3 9.4e-141 497.7
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 52.4 9.1e-144 507.7
Car13g00974 . 110 587 Xyloglucan Fucosyltransferase1 AT2G15370 50.8 2.3e-139 493.0
Car04g01713 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 55.8 9.7e-154 540.8
Car13g00974 . 119 587 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 3.5e-151 532.3
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14080 52.3 4.2e-149 525.4
Car04g01713 . 81 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.0 8.4e-163 570.9
Car13g00974 . 119 588 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 2.3e-160 562.8
Car01g00737 . 94 581 Xyloglucan Fucosyltransferase1 AT1G14100 54.3 2.0e-156 549.7
Car04g01713 . 81 570 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 7.3e-137 484.6
Car13g00974 . 119 589 Xyloglucan Fucosyltransferase1 AT1G14110 51.9 1.3e-133 473.8
Car04g01713 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 53.6 3.3e-151 532.3
Car13g00974 . 99 586 Xyloglucan Fucosyltransferase1 AT2G15350 50.5 1.2e-145 513.8
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 2.5e-188 655.6
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT3G19280 63.9 3.2e-183 638.6
Car19g00455 . 1 509 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 2.3e-189 659.1
Car16g00318 . 5 515 Xyloglucan Fucosyltransferase1 AT1G49710 63.1 5.6e-183 637.9
Car15g00517 . 7 398 Xyloglucan Fucosyltransferase1 AT1G71990 68.2 2.5e-162 568.9
Car04g02390 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 67.1 7.5e-159 557.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00455 Car_Chr19 FPKM 53.164257 63.736691 0.0 0.0 0.0 0.0 0.230303 0.180877 0.237865 0.157717