Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00460 ATGTCATCCTACCGCCCCGCCGTCTTCCGCCGCATCACCGAGGAGCAGGAGGTCTCTATCATTGTCGACGCCCTCACCCACGTCATCTCCGGCGCCGCTGCTTCCGGTCTCGAGTTCCGCCACGACGATTTCCTCCGCCGCCTCCTCCTCCCGCCTTCTACTGACAATACCGCCGCCGCCTTCTCGGGTTCTTCAGATTTCGACACGTGTCAAGCCTGCAGAATCAACGGCTGCTTGGGCTGCCACTTCTTCTCCGCCCCCTCCTCCTCCTCCTCCTCCACCCGCCGTATCAGACGCCTGAAGAAGAATTACAGAGGCGTCCGCCTGCGCCCTTGGGGCAAATGGGCCGCCGAGATCCGCGACCCGAAACGTGCGACGCGAGTCTGGCTTGGTACCTTCAACACCGCCGAGGACGCCGCACGTGCCTACGATGAAGCCGCCATTAAATTCCGCGGCGCACGTGCCAAACTCAATTTCCCCCTCCCTGGCAATTCATCAACGACTTCCACAACCACCTCCGCCGTCAATGAATCGGCAGTAGCTCCAAGAACATCGCCGATGAAAATGGAGACGAAAAACTACACCTTACCCGAGATTTTCAAGGTCGATGACGACGACGACGACAACGACGACATTCAACGATTGATCAATGACTTTGCAGGCCATTCACGAAGCTAA 678 58.55 MSSYRPAVFRRITEEQEVSIIVDALTHVISGAAASGLEFRHDDFLRRLLLPPSTDNTAAAFSGSSDFDTCQACRINGCLGCHFFSAPSSSSSSTRRIRRLKKNYRGVRLRPWGKWAAEIRDPKRATRVWLGTFNTAEDAARAYDEAAIKFRGARAKLNFPLPGNSSTTSTTTSAVNESAVAPRTSPMKMETKNYTLPEIFKVDDDDDDNDDIQRLINDFAGHSRS 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6303101 6303778 + Carg22064-RA Car19g00460 167427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00460 225 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Car19g00460 225 MobiDBLite consensus disorder prediction 161 180 - -
Car19g00460 225 MobiDBLite consensus disorder prediction 161 185 - -
Car19g00460 225 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00460 - - - bhj:120078250 256.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00460 Car-Chr19:6303101 Car14g01067 Car-Chr14:9459038 3.19E-27 dispersed
Car09g01066 Car-Chr9:9559265 Car19g00460 Car-Chr19:6303101 1.05E-85 transposed
Car20g00949 Car-Chr20:10847920 Car19g00460 Car-Chr19:6303101 8.61E-34 transposed
Car16g00320 Car-Chr16:1973776 Car19g00460 Car-Chr19:6303101 1.38E-42 wgd
Car19g00460 Car-Chr19:6303101 Car04g00467 Car-Chr4:2643602 8.44E-48 wgd
Car19g00460 Car-Chr19:6303101 Car07g00701 Car-Chr7:3599961 2.44E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g418 . . . . . Bpe12g00058 . . Cmo19g00624 Cmo11g01359 . . . . Sed04g1638 . . Bhi05g01124 Tan02g0906 Cmetu06g0968 . Hepe02g0583 . . Cla02g00597 Cam02g0626 Cec02g0626 Cco02g0641 Clacu02g0630 Cmu02g0626 Cre02g0950 Cone6ag1392 . . . . Csa07g00764 . . Blo04g00488 Blo13g00573 . Bda14g00518 Bpe15g00897 . Bma03g00518 Bma08g00799 . . . Cma11g01754 Cma19g00606 . Car19g00460 . . . . . . . . . . . . . . . . . . Chy01g00050 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000711 2 2 3 3 2 3 5 3 3 3 3 3 5 3 3 5 3 7 2 3 3 5 3 3 2 3 3 4 3 2 97
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5271 PF00847 AP2 1.30E-14 CL0081 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00460 Car_Chr19 FPKM 6.41152 7.05795 8.898606 8.302252 3.717789 3.540804 4.131164 10.776169 10.339749 10.681767