Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00469 ATGACTGAGTATTGGGTTAGCCAAGGTAACAAATGGTGCGACTTCTGCAAAATATTTATTTCAAATAATCCTTCCACAATCCGAAATCATGAGCTCGGAGAACGTCATAAGGACAATGTTGCCAAAAGGCTTGCAAACATGAGAAAAGAGAATGCTGCCAAGGACAAGGAACAAAAGGAAGCTGTACGCGCGGTTGAGCAAATTGAGGCAAAAGCTAAGCGTAGTTATCAGAAGGACATAGCAAATTTCCGGGAAGCTAGAGATTCTCATGCACTTCCTGTTGATGTTCAAGAAAATGAAGAGAAATGGGAGCTTGACAGCACTACAGGCTATTATTACAATGAAAGCAATGGTTTTTACTATGACTCAAATTCTGGCTTCTACTACTCTGATGCTATTGGCAAGTGGGTAACACAGGAAGAGGCACATGCTTCGCCTCAGTTCTTTTTGAACTCCAAACATAAGAAACCAGTTTTAGAGAACCCATCATCGGCCTCTGCAAGTGCAGCTACAAAAGACAAAAATGTGGATAAAGGGGAAAGCGGGCCTCCGCCTGGGTTGGTTGTTTCAGCTTCTTCAAAACCCAAGCGATCGGTTAAAGGTGCTCCTTCATCGATTGCTGTTGGTAAGAGGAAGAGGCCAAATGAGAAGCAAAAGGTCATATCTGAAGAAGAAAAAGCTGCACTTAAAGCAAGGGAGGCTGCAAAAAAGAGGGTTGAACAGAGGGAGAAGCCACTTCTCGGCCTTTACAAATTGCCCTGA 762 43.44 MTEYWVSQGNKWCDFCKIFISNNPSTIRNHELGERHKDNVAKRLANMRKENAAKDKEQKEAVRAVEQIEAKAKRSYQKDIANFREARDSHALPVDVQENEEKWELDSTTGYYYNESNGFYYDSNSGFYYSDAIGKWVTQEEAHASPQFFLNSKHKKPVLENPSSASASAATKDKNVDKGESGPPPGLVVSASSKPKRSVKGAPSSIAVGKRKRPNEKQKVISEEEKAALKAREAAKKRVEQREKPLLGLYKLP 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6354422 6358555 - Carg22055-RA Car19g00469 167436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00469 253 Gene3D Classic Zinc Finger 9 78 - -
Car19g00469 253 SUPERFAMILY beta-beta-alpha zinc fingers 12 57 IPR036236 -
Car19g00469 253 ProSiteProfiles Zinc finger matrin-type profile. 11 42 IPR000690 GO:0003676|GO:0005634|GO:0008270
Car19g00469 253 SMART ZnF_U1_5 8 43 IPR003604 GO:0003676|GO:0008270
Car19g00469 253 Coils Coil 37 57 - -
Car19g00469 253 Pfam OCRE domain 100 148 IPR041591 -
Car19g00469 253 MobiDBLite consensus disorder prediction 210 245 - -
Car19g00469 253 MobiDBLite consensus disorder prediction 158 253 - -
Car19g00469 253 Pfam U1 zinc finger 11 43 IPR013085 GO:0008270
Car19g00469 253 PANTHER WW DOMAIN BINDING PROTEIN 4 1 245 IPR040023 GO:0000398
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00469 K13220 WBP4, FBP21; WW domain-binding protein 4 - qsu:112004220 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00469 Car-Chr19:6354422 Car04g02187 Car-Chr4:17812765 8.51E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g451 . . . . . Bpe12g00060 . . Cmo19g00635 . . . . . Sed10g2044 . Cpe15g00499 Bhi05g01134 Tan02g0890 Cmetu01g0261 . Hepe02g0574 . . Cla02g00585 Cam02g0618 Cec02g0617 Cco02g0633 Clacu02g0615 Cmu02g0611 Cre02g0942 Cone12ag1107 Cone8ag1147 . . . Csa07g00774 . Cme01g00036 . Blo13g00570 Bda15g00031 . . . . Bma08g00796 . . . . Cma19g00616 . Car19g00469 . . . . . . . . . . . . . . . . Lsi11g01021 . Chy01g00042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008813 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00469 Car_Chr19 FPKM 0.640531 0.530833 1.09273 0.976609 3.151308 3.845966 3.798978 1.600178 1.470975 1.850599