Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00483 ATGGGGCAATTTGTACCTCATATAGCTTCTGGTTTTGTATTCACTCTTCTTGGCCTTTGGCATACTCTGAATACAATCAAAGCCTACAATCTCGGATGCGGTTCGAACTTTAAAGTAAGATTTTGGTACCCTCTCGATTGGCCCCATTCCAATCTCAAGTACTTAGAGCTCATTCTCGTGTTCTCTTTTTCGGTCATTGGAATTTTCGGACAATTTTGGGACTACCCTTTCATTCATTTGTCTTTCAATGTCATCAACTTGGAGCATGCAACGATGTTCCTGCACCTTGCCGTATTTTCGGGGTTTGCCCTCTACAACGAGCTGAATCATTCGTCGAACTTATTGTCTGGGGTCGAGGGTGTCTTTGCAGCATGTGTGTTCAGTCAAGAACTGTTCTTGCTCCATTTCCACTCGGCTGATCACAATGGCATTGAAGGCCATTACCATTGGCTCTTGCAGCTCATTGTGTTTGCATCGCTCGTGTCGGTAATAGTAGCTGCTTGTTGTCCTACCTGCTTTCCAGCAGCCATTGTTCTTTCGTTATTGGTTGTTTTGCAAGGGTGTTGGTTCATGAACATGGGGTTCATGCTATGGGTTCCAAACTTAGTTCCTAAGGGCTGCAGCATGAGGATCGTGGAGAACGGTAAAGACGAAATGCTCGGAGCAGTGATTTGTGCCTCCAAGGAAGCTGATATGAGGGCACGAGCGCTCGCTAACCTGCAATTCAGTTGGATACTAGCAGGGATTCTCATATTTACTGGATTTATAAGCCTCAAATGTACAAAATCTGATACTTGCACCCCAAAGATCCAGCTATCGGACTACGAGCAGCTTTGA 837 45.16 MGQFVPHIASGFVFTLLGLWHTLNTIKAYNLGCGSNFKVRFWYPLDWPHSNLKYLELILVFSFSVIGIFGQFWDYPFIHLSFNVINLEHATMFLHLAVFSGFALYNELNHSSNLLSGVEGVFAACVFSQELFLLHFHSADHNGIEGHYHWLLQLIVFASLVSVIVAACCPTCFPAAIVLSLLVVLQGCWFMNMGFMLWVPNLVPKGCSMRIVENGKDEMLGAVICASKEADMRARALANLQFSWILAGILIFTGFISLKCTKSDTCTPKIQLSDYEQL 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6449452 6450288 - Carg22041-RA Car19g00483 167450

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00483 278 Pfam Family of unknown function (DUF716) 117 256 IPR006904 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00483 - - - cmos:111455498 562.762
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01072 Car19g00483 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00542 Car-Chr6:3054490 Car19g00483 Car-Chr19:6449452 8.79E-34 dispersed
Car16g01137 Car-Chr16:9719771 Car19g00483 Car-Chr19:6449452 7.39E-37 dispersed
Car20g00031 Car-Chr20:183384 Car19g00483 Car-Chr19:6449452 6.46E-45 transposed
Car11g01072 Car-Chr11:8313420 Car19g00483 Car-Chr19:6449452 2.56E-177 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g524 . . . . . . . . Cmo19g00649 Cmo11g01332 . . . . Sed10g2064 Cpe04g00256 . Bhi05g01166 Tan02g0861 Cmetu01g0313 . Hepe02g0554 . . Cla02g00566 Cam02g0596 Cec02g0596 Cco02g0607 Clacu02g0591 Cmu02g0589 Cre02g0919 . . Cone3ag1124 Cone10ag1133 . Csa07g00812 . . Blo04g00497 . . . . . . . . . . Cma11g01778 Cma19g00634 Car11g01072 Car19g00483 . . . . . . . . . . . . . . . . Lsi11g01043 . Chy01g00017 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012024 0 1 1 0 0 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00483 Car_Chr19 FPKM 5.49931 5.143466 6.172865 6.350641 7.812749 8.059725 9.096595 28.587255 29.066645 31.684662