Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00488 ATGAACTATCAGCCTCTCGCACTTCATTCCGCTACCGAAAACTCGATTCCGAAGGCTGAGATGGATCTGATTAAACAAATAGCCGTCTTGGAGTTAGAAGTCGTTTATTTGGAAAAGTACCTCCTGTCGTTATACCGACGAACTTTCGAGCAACAAGTATCCTCTTTTTCTACCATGGATGATAGCCAAGAATCATTTGGCAATCAATGTAAAGAACGAAATGAAGACGAGGAACCAGAGAAGTTGTTACACGTTCACCGCAGCTATTCATCTCTTTCGCAGAGATCGCCCGGTTCATCTCGAAGCTATCCGTTATCAAAGTATATGGCTAAAGCAGTAGATTCATACCATTCCCTTCCATTATCAATGCTGGAGCAATCTCGAGTTGATGCTTCGAATTCTACGAGTCTCGGGGAGCACCTCGGGGCCTGGATATCGGATCGAGCAGACGAGTCGCCTAACTGGATTGCTGAGGAGATGATCAAGTCCATCTCTGCAATATACCGCGAACTTACCGAACCTCCTTCGACGAATCATAGGAATCGTTCTCCTATCTCACCGTTGTCATCCATGTACGAACTTTCTTCACAAGACTTGTGCAGTACAAGGAACTACGAAAAGTCGTTTAACTCGAATTTCGAGAACTCGTTTCACACCGGAGAATTTAGTGCACCGTATGACACGATGTTGAAGGTGCAATGGCTTTCTAGAGAAAGAATGAAGGACTTAGATATCAACCACATGCTACAAGGCTTCAGGTCACTTACTTCTCGGCTCAAAGATGTCGATCTCAAAGTCATGAAACACGACGAAAAACTCGCGTTTTGGATTAATGTACACAACACGCTCGTAATGCATGCTTATTTGCAATATGGTATCCCCAAGAACAGTTTAAAGACATTGATACTCAAGTGGCTGCACTTGTTCCTCTCGTCGAAAACGAAACTTAAGGTCAATGATGCACAGAAATCCTTTCGAATCAACCTCCCCGAACCTCGGTTATACTTCGCTCTATGTTGCGGGAGCCATTCCGATCCAGCAGTTCGTGTCTATACGGCGAAGAGGCTGAACGAGGAGTTGGAGGTTGCAAAAGAAGACTACATCCTTTCGAATTTGAGGACACACAAAGGGCAGAGAATTCTACTCCCCAAGATTGTTGAGTCCTTTGCCAAGGATTCTGGCTTATGCGTGGAAGATTTGGAGGACATTGTCGAGCGTCTAAGGCTCGACGGGCGGATAAACGACAGTCGGCAGCTGCAACGAAAGAAGTTGTGGAAGAGTATTGGGTGGATACCTCACAACTTCACCTTCAGCTTTCTGCTATCCAAAGAATTGGGATGCCACCAGTCCCTGTCTTGA 1359 45.4 MNYQPLALHSATENSIPKAEMDLIKQIAVLELEVVYLEKYLLSLYRRTFEQQVSSFSTMDDSQESFGNQCKERNEDEEPEKLLHVHRSYSSLSQRSPGSSRSYPLSKYMAKAVDSYHSLPLSMLEQSRVDASNSTSLGEHLGAWISDRADESPNWIAEEMIKSISAIYRELTEPPSTNHRNRSPISPLSSMYELSSQDLCSTRNYEKSFNSNFENSFHTGEFSAPYDTMLKVQWLSRERMKDLDINHMLQGFRSLTSRLKDVDLKVMKHDEKLAFWINVHNTLVMHAYLQYGIPKNSLKTLILKWLHLFLSSKTKLKVNDAQKSFRINLPEPRLYFALCCGSHSDPAVRVYTAKRLNEELEVAKEDYILSNLRTHKGQRILLPKIVESFAKDSGLCVEDLEDIVERLRLDGRINDSRQLQRKKLWKSIGWIPHNFTFSFLLSKELGCHQSLS 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6492102 6495360 + Carg22035-RA Car19g00488 167455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00488 452 MobiDBLite consensus disorder prediction 58 81 - -
Car19g00488 452 Pfam Protein of unknown function, DUF547 266 305 IPR006869 -
Car19g00488 452 Pfam Protein of unknown function, DUF547 313 368 IPR006869 -
Car19g00488 452 MobiDBLite consensus disorder prediction 66 81 - -
Car19g00488 452 Pfam Leucine-zipper of ternary complex factor MIP1 9 51 IPR025757 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00488 - - - csv:101203131 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00390 Car-Chr2:2937122 Car19g00488 Car-Chr19:6492102 8.00E-106 dispersed
Car15g01023 Car-Chr15:7993328 Car19g00488 Car-Chr19:6492102 2.13E-38 dispersed
Car19g00488 Car-Chr19:6492102 Car15g00363 Car-Chr15:1904438 1.21E-26 dispersed
Car19g00488 Car-Chr19:6492102 Car03g00920 Car-Chr3:7236378 2.06E-102 wgd
Car19g00488 Car-Chr19:6492102 Car07g00728 Car-Chr7:3746257 4.02E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1128 Cone8ag1175 . . . Csa07g00820 . . Blo04g00500 . . Bda14g00534 . . Bma03g01401 . . . . . . . Car19g00488 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009608 1 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00488 Car_Chr19 FPKM 0.124483 0.137052 0.384932 0.222348 2.2719 3.265981 3.073328 0.307635 0.179775 0.213908