Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00490 ATGGAGGGTACCTGCAGTTCTCTGCGGTCACCGGCTTTAACCATAGCGCCCTCCTCTTTGTCTAGAAGTGGGTTCTCAGAGAAGCCATTGTTGCCTGCTCGAGCTGTGAAATTATCGAAGAACAAGAGATACCCACTTGCTCGAAGCCTCAAATTTCTTCCCATTACAGCTCAAGCTTCGAGCACAAGTAGTTTTAGCTCAGAGGCAGCTCCGGCAATTTCAAAGAAGGAAGGTTCAAAAGATGAGGATCTTAGTGTTAAAAAGATCAAGCTTGATGAAGCTGTAGAAAAGCTTGAAACTGTGGTATGTGACTTGGAGAGACCAAATCAGATTGGACCCGCAATAGGGAATGCATCGATAGTTATTTGCTGCATTGGTGCAAGTGAGAAGGAGATTTTTGATATCTCTGGACCTTATCGAATCGACTATATGGCTACCAAAAACTTGGTTGAAGCAGCAACCGTTGCAAAAGTGAAGCATTTCGTTCTGCTTACGTCCCTCGGAACCAACAAGATTGGATTTCCTGCTGCCATTCTCAACTTGTTTTGGGGAGTCCTGTTATGGAAAAGGAAGGCAGAAGAAGCATTGATTGCAAGTGGTCTTCCTTATACAATAGTGAGACCTGGGGGCATGGAGAGGCCTACAGATACTTTCAAGGAAACTCATAACACTACTGTTTCGCCCGAAGATACTTTGTTTGGTGGTCTGGTTGCAGAGCTCATGGCATGCATAGCAAAAAATCCTGGTCTCTCATGCTATAAAGTGATAGAAGTAATTGCCGAGACAACTGCACCATTGACTCCCCTAGAGGATCTTCTTACAAAAATACCATCTAAAAAGCTCAGTATAGACGTTATAATAGTTAATCTTCTGGTTTCTTCATATATCGTGGAGGTTATGCCTACGTTCTCCTTCTGCTGCGAACCGTCGAGCATTGCCAAAGAAAAGGAATCAGCTGAAGCAAAGGCACCCACTCAAAGGGTTTCATCAGAACAGTTGAACATTGCAAAAGAGAAGGAATCAGCTGTAGCAAATGTTACAAAACAGTCATCATCACCCTACATTTCGTACGAGGATTTAAAACCTCCAACATCACCTACTCCATCTGCACCTGTTGGGATCGTCGACGGAGTCTCATCGATAGCTCAAACGAGTTCATCAGAATCGTCAACTGAAATTGCTGAGGCAAAACCTGCACCTGCTCCTGAAAAAGCAGTGACACCTCTCTCCCCTTATGTAGCATATGAAGATCTAAAGCCTCCTACATCACCATCTCCTAGTGCACCTTCCCTATCATTTTCGTCAACATCTCCCTCAAACGGTCCACCTCAGCCTGCTACCGCGAACGTAAACAGCTCAACACCGATTCCAGAGGCAGACGTCTCGAGTGAAACACATCTTCCCAAGCCGAAGAAGCTACAACCACTGTCACCTTTCACCATGGACGAGCGTTTTTCCAAGGAAGAACATTATGAGTGGTTTAAGGATTATTCCCATTTTCGAAATCTCATACTTCCACTTCTCAAACCCGATTCATCAGTGTTGGAATTGGGTAGTGGAAATTCGAAGCTTTCTGAGGAATTATATAACGATGGAATTACTGATATAACATGCATTGATTTGTCTGCTGTTGCTGTTGAAAAGATGCAAAAACGTTTACATTTGAAGGGTATGAAAGAAATAAAGGTGCTAGAAGCTGACATGCTAGACATGCCTTTCGGTGACGAGTGTTTTGACGTCGTTGTCGAGAAAGGAACCATGGATGTCTTGTTCGTTGATGGCGGTGACCCGTGGAATCCTCAACCATCGACGCGATCGAAGGTCATGGCAATGCTCGAAGGTGTTCATAGGGTCTTGAAGAAAGATGGCATTTTTGTGTCAATTACATTTGGCCAGCCGCATTTCAGGCGCCCCTTATTCAATGCGCCCGAGTTTACTTGGTCGTTTGAGTGCAGTACTTTTGGCGATGGATTTCATTACTTCTTCTACACCTTGCGTAAGGGAAGGCGATCGTCGGATGATATGGATGAAGTTGAGAGATCTGTGACACCGTCGATCTGTCTACTGCAAGACGAGCTAGAGGGTGAAGATTACATGTTCAGAACGGACGTCGATGAGCTGAATTGCTAG 2130 44.65 MEGTCSSLRSPALTIAPSSLSRSGFSEKPLLPARAVKLSKNKRYPLARSLKFLPITAQASSTSSFSSEAAPAISKKEGSKDEDLSVKKIKLDEAVEKLETVVCDLERPNQIGPAIGNASIVICCIGASEKEIFDISGPYRIDYMATKNLVEAATVAKVKHFVLLTSLGTNKIGFPAAILNLFWGVLLWKRKAEEALIASGLPYTIVRPGGMERPTDTFKETHNTTVSPEDTLFGGLVAELMACIAKNPGLSCYKVIEVIAETTAPLTPLEDLLTKIPSKKLSIDVIIVNLLVSSYIVEVMPTFSFCCEPSSIAKEKESAEAKAPTQRVSSEQLNIAKEKESAVANVTKQSSSPYISYEDLKPPTSPTPSAPVGIVDGVSSIAQTSSSESSTEIAEAKPAPAPEKAVTPLSPYVAYEDLKPPTSPSPSAPSLSFSSTSPSNGPPQPATANVNSSTPIPEADVSSETHLPKPKKLQPLSPFTMDERFSKEEHYEWFKDYSHFRNLILPLLKPDSSVLELGSGNSKLSEELYNDGITDITCIDLSAVAVEKMQKRLHLKGMKEIKVLEADMLDMPFGDECFDVVVEKGTMDVLFVDGGDPWNPQPSTRSKVMAMLEGVHRVLKKDGIFVSITFGQPHFRRPLFNAPEFTWSFECSTFGDGFHYFFYTLRKGRRSSDDMDEVERSVTPSICLLQDELEGEDYMFRTDVDELNC 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6507251 6519512 - Carg22033-RA Car19g00490 167457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00490 709 MobiDBLite consensus disorder prediction 378 393 - -
Car19g00490 709 MobiDBLite consensus disorder prediction 354 478 - -
Car19g00490 709 MobiDBLite consensus disorder prediction 428 460 - -
Car19g00490 709 Pfam NAD(P)H-binding 93 232 IPR016040 -
Car19g00490 709 Pfam Methyltransferase domain 510 630 IPR025714 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00490 - - - hbr:110664996 658.292
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00560 Car-Chr2:4316281 Car19g00490 Car-Chr19:6507251 1.15E-06 dispersed
Car03g00369 Car-Chr3:4518813 Car19g00490 Car-Chr19:6507251 7.11E-14 dispersed
Car03g01244 Car-Chr3:9607895 Car19g00490 Car-Chr19:6507251 1.44E-18 dispersed
Car07g00103 Car-Chr7:632283 Car19g00490 Car-Chr19:6507251 1.75E-14 dispersed
Car11g00742 Car-Chr11:4320207 Car19g00490 Car-Chr19:6507251 6.53E-12 dispersed
Car14g01380 Car-Chr14:11617761 Car19g00490 Car-Chr19:6507251 7.48E-23 dispersed
Car19g00490 Car-Chr19:6507251 Car17g00933 Car-Chr17:7662608 7.70E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g547 . . . . . . . . Cmo19g00657 . . . . . . . Cpe15g00520 . . . . . . . . . . . . . . . Cone8ag1176 . . . Csa07g00822 . . . . . Bda14g00535 . . Bma03g00535 . . . . . . . Car19g00490 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002707 3 2 3 1 1 2 1 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 2 2 1 2 1 4 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00490 Car_Chr19 FPKM 0.039926 0.0 0.357353 0.201566 0.732306 0.61008 0.688664 0.198908 0.280949 0.20376