Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00493 ATGATTAAGCTTTTTAAAGTGAAGGAAAAGCAGAGAGAGATTGCACAGAATGCCAATGGAAAACCTCCTGGCAAGAAGCAAAGTGCAGGAGAATTGCGTCTTCAAAAAGATATCAGTGAATTGAACCTACCAAAAACGTGTTGTATATCGTTTCCTAATGGCAAGGATGACTTGATGAACTTTGAGGTCACTATTCAGCCTGATGAAGGATATTATCTAGGCGGCACGTTTCTCTTCTCTTTCCAAGTTTCCCCTGTGTACCCTCACGAGCCACCAAAAGTGAAGTGCAAGACAAAGGTGTATCATCCTAATATTGACTTGGAAGGAAATGTTTGTCTCAACATCTTAAGAGAGGACTGGAAGCCCGTTCTGAATATCAACACTATCATATACGGATTATTTCATCTTTTCACGCAACCAAATCATGAAGACCCCCTCAACCACGATGCTGCAGCTGTTTTAAGGGATAACCCGAAGACGTTCGAATCCAATGTGAGAAGAGCAATGGCTGGGGGATATGTGGGACAGACATACTTCACGCGTTGCATGTAG 552 42.57 MIKLFKVKEKQREIAQNANGKPPGKKQSAGELRLQKDISELNLPKTCCISFPNGKDDLMNFEVTIQPDEGYYLGGTFLFSFQVSPVYPHEPPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNHEDPLNHDAAAVLRDNPKTFESNVRRAMAGGYVGQTYFTRCM 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6535628 6537842 + Carg22030-RA Car19g00493 167460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00493 183 SMART ubc_7 32 174 - -
Car19g00493 183 CDD UBCc 33 167 IPR000608 -
Car19g00493 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 12 173 - -
Car19g00493 183 PANTHER - 12 173 - -
Car19g00493 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Car19g00493 183 SUPERFAMILY UBC-like 21 180 IPR016135 -
Car19g00493 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Car19g00493 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Car19g00493 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00493 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - csv:101214340 367.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g01061 Car19g00493 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00929 Car-Chr3:7282168 Car19g00493 Car-Chr19:6535628 4.44E-119 dispersed
Car19g00493 Car-Chr19:6535628 Car16g00619 Car-Chr16:3963955 1.08E-28 dispersed
Car11g01061 Car-Chr11:8189990 Car19g00493 Car-Chr19:6535628 1.93E-130 wgd
Car19g00493 Car-Chr19:6535628 Car07g00742 Car-Chr7:3824383 9.29E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g555 . . . . . . . . Cmo19g00660 Cmo11g01317 . . . . . Cpe04g00246 Cpe15g00523 Bhi05g01195 . . . . . . Cla02g00546 Cam02g0569 Cec02g0572 Cco02g0583 Clacu02g0570 Cmu02g0566 Cre02g0897 Cone12ag1136 Cone8ag1183 Cone3ag1141 Cone10ag1152 . . . Cme01g01472 . . . . . . . . . . . Cma11g01736 Cma19g00649 Car11g01061 Car19g00493 . . . . . . . . . . . . . . . . Lsi11g01069 . Chy01g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00493 Car_Chr19 FPKM 23.692593 27.493727 31.157269 39.55492 34.80682 30.591022 44.15876 30.878979 32.700264 37.091129