Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00495 ATGGAGAGAAGTGCTCGGAGGCGGATCAATTTGATTCATCGTCACCTTCTTTCGCCGCCATGTGAGTTCAACAACGCTCTTAATCCGGCGCCAACGAATAGTGGAAACCAATTGGAAATTGGTGTGGCTGAGCCTGTGATTGTTGGAGGTATGGTGCTGGATATTCACGCCATACCATCCATTTCCGCCGTTCCGAGGTCAACTACGCCCGGAAAGATCAACTATATATTAGGAGGCGTAGCACGGAATGTTGCTGAATGCATGTCAAAGCTTGGGAGCAACCCTTTTATGATTAGTGTGGTGGGACATGACATGGCAGGGAATCTCTTGTTTGAGAATTGGAGATTGGCAGGGTTATCAACAGAAGGCATTCGGAAGCACCAAGACATCAGCACTGCTGTTGTGTGTGCCGTAGTTGATGTCCATGGAGAATTGGCAGCTGCTGTGGCTAGTGTGGAAGCTATTGAAAAATTTCTCACACCTGATTGGATTGAGAAATTCAAGTGCAATATTCGTGCTGCACCGGTGGTTATGGTTGATGCAAATCTAAATCCACATGCTCTGAAAGTCTCTTGCCAAATTGCTGCCGAGTATGATACTCCAGTGTGGTTTGAGCCTGTGTCAGTTGCTAAATCAAGAAGGGTTGCTTCAGTTGCCAAGTATATAAGTTTCACTTCCCCTAATGAAGATGAACTTATCGCCATGGCCAATGCATTATCTGGTCAAGATTTGTTTTCTCCTATCAAACGAGATAATACCATTACTAGTTCAATTGAATCTTTTTTCGAACAACTGAAATCTGCTGTATGGGTTTTGCTTGAGAAAGGTATCAAGGTCGTCATTCTGACCGTTGGTTCTCGCGGGGTATTCGTCTGTTCTAAAGGCGGGCCAAGCTTCGTGAAAAAAATTTCAAAAGAAATCAACAATTATGGGTCCAGCAGCCAACTATTTAGAACCTTAGCTACGAGTTGTCCACCAAACATGTTCTCAGTTTCTCCTGAAACAGAGAAAAACTCTGTTCTTTTTGCAATGCACTTCCCTGCCCTTCCTGCATCAGTAGTGAGGCTTACAGGCTGCGGAGATTGCTTGGTTGGTGGCATGCTTGCTTCCTTTTGCGCTGGCTTAAATATCTACCAAAGTACAGCCATTGGAATTGCAGCTGCCAAAGCTGCTGTCGAGACCGAAAACAACGTACCCCGTGAATTTCATTCAAACGAAATTGCAGTTTGGCAGTATATTTATATGCAAATGAGGCATCTGAAACATGGGTTACTATGCCATGTCCAAGCCATCAAATCCGGAGATTTGGTTACTTACAACTCAATGTTGTCTGGTTATGTTAGCTCTGATGGGTATGAGTCTCAAGCACTTGGGCTTTTTGTGGAAATGCAAACAGCCCCTGATATGATTAGAATTGATGAGTTTAGTCTTACAATCATGCTTAATTTAACTGCTAAGTTATGTGTGCTGTCTTATGGTAAACAGTTACATACCTTCATGTTGAAGACTGCTAATGATTTAAGCGTTTTTGCTGCTAGTTCCTTAATTGATATGTACTCTAAGTGTGGATGTTTTAAAGAAGCTTGTAGAGTTTATGATGGATGTGGTGAGGTTATTGATTTGGTCTCTAGAAATGCCATGGTAGCAGCTTGTTGTAGAGCAGGGGAGATAGATTTGGCTGTGGATCTTTTCTCGAGGGAACGGGATCGAAATGATGTTGTAGCATGGAACACGATGATATCGGGTTTTGTTCAGAACGGTTACGACGAAGAGTCATTAAAGTTATTCGTTAATATGGCAGATGAAAATGTTAGGTGGAATGAACACACTTTTGCAAGTGTCTTGAGTGCTTGCTCCAATCTAAAGAGCTTGAAGCTTGGAAAGGAAATCCATGCTTATGTTTTGAAGAATGGGTTGATTGTTAATCCCTTCATTGGCAGTGGCCTTGTTGATGTATACTGCAAGTGCAATAACATGAGGTATGCCGAGTCGGTTCATTCGGAATTGACAACACGAAATGTATACTCGATCACTTCAATGATTGTTGGCTATTCTTCTCAAGGTAACATGGTAGAAGCCAGAAGGCTTTTTGATTCCTTGGATGAAAAGAATTCTGTCGTGTGGACTGCTTTATTTACTGAATATGTCAAATCACAGCAATTTGAAGCAGTTTTTGAACTTTTAAGTGAATATAGGAAGGAGGCAGCTGTTCCTGATGTGCTGATTCTTGTCAGCATAATTGGTGCTTGTGCTAGACAAGCTGCTCTGGCTCCCGGGAAGCAGATACACGGTTACATGCTCCGAGCAGGCATCGAATTCGACGTGAAACTAGCCAGTTCATTGGTTGATATGTACTCAAAATGTGGAAGTATCATTTATGCAGAGAGAATTTTCAGAGAAGTTCTTGACAAGGATTCTATTCTTTACAACATTATGATAGCTGGCTATGCTCACCATGGGTGGGAAAATGAAGCAGTTCATCTTTTCAAGGAAATGACGGAAAACGATCTCAAACCAGATGCAATCACTTTCATTGCACTACTTTCTGCATGTCGACACAGCGGTTTAGTCGAACTAGGTGAGCGTTTTTTCAACTCTATGACTAATGATTACAATATTAGTCCCGAAATCGATCATTATGCTTGTATGATCGATTTGTACGGAAGGGCTAATGAACTAGACAAGGCATTGGCATTCATGAAAAGGATTCCCATAGAGTTGGATGCTGTCATATGGGGAGCATTTCTGAATGCTTGTAGGATCAATGGGAATACTGAACTTGCTAGAGAAGCAGAAGACGAACTGTTGATGATCGAAGGAGAAAACAGCGCTCGATATGTGCAGTTAGCGAATGTTTATGCTGCAGAAGGGAATTGGGAGGAGATGGGGCGAATAAGGAAGAAGATGAAAGGAAAGGATGTTAAGAAGAATGCTGGTTTTAGTTGGGTTTTTGTGGAAAATAAGTTCCATGTGTTCATTTCTGGTGATAGGTTTCACTTACAAAATGAGGCTATATATTCAACCTTAGCCTCCTTGACTGATGAGTTGCTTGCAGGAGAGGAAGCATTTTGTTAA 3075 41.98 MERSARRRINLIHRHLLSPPCEFNNALNPAPTNSGNQLEIGVAEPVIVGGMVLDIHAIPSISAVPRSTTPGKINYILGGVARNVAECMSKLGSNPFMISVVGHDMAGNLLFENWRLAGLSTEGIRKHQDISTAVVCAVVDVHGELAAAVASVEAIEKFLTPDWIEKFKCNIRAAPVVMVDANLNPHALKVSCQIAAEYDTPVWFEPVSVAKSRRVASVAKYISFTSPNEDELIAMANALSGQDLFSPIKRDNTITSSIESFFEQLKSAVWVLLEKGIKVVILTVGSRGVFVCSKGGPSFVKKISKEINNYGSSSQLFRTLATSCPPNMFSVSPETEKNSVLFAMHFPALPASVVRLTGCGDCLVGGMLASFCAGLNIYQSTAIGIAAAKAAVETENNVPREFHSNEIAVWQYIYMQMRHLKHGLLCHVQAIKSGDLVTYNSMLSGYVSSDGYESQALGLFVEMQTAPDMIRIDEFSLTIMLNLTAKLCVLSYGKQLHTFMLKTANDLSVFAASSLIDMYSKCGCFKEACRVYDGCGEVIDLVSRNAMVAACCRAGEIDLAVDLFSRERDRNDVVAWNTMISGFVQNGYDEESLKLFVNMADENVRWNEHTFASVLSACSNLKSLKLGKEIHAYVLKNGLIVNPFIGSGLVDVYCKCNNMRYAESVHSELTTRNVYSITSMIVGYSSQGNMVEARRLFDSLDEKNSVVWTALFTEYVKSQQFEAVFELLSEYRKEAAVPDVLILVSIIGACARQAALAPGKQIHGYMLRAGIEFDVKLASSLVDMYSKCGSIIYAERIFREVLDKDSILYNIMIAGYAHHGWENEAVHLFKEMTENDLKPDAITFIALLSACRHSGLVELGERFFNSMTNDYNISPEIDHYACMIDLYGRANELDKALAFMKRIPIELDAVIWGAFLNACRINGNTELAREAEDELLMIEGENSARYVQLANVYAAEGNWEEMGRIRKKMKGKDVKKNAGFSWVFVENKFHVFISGDRFHLQNEAIYSTLASLTDELLAGEEAFC 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6543542 6551368 - Carg22028-RA Car19g00495 167462

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00495 1024 Pfam PPR repeat 678 704 IPR002885 -
Car19g00495 1024 Pfam PPR repeat 437 464 IPR002885 -
Car19g00495 1024 Pfam PPR repeat 513 533 IPR002885 -
Car19g00495 1024 Pfam PPR repeat 542 565 IPR002885 -
Car19g00495 1024 Pfam PPR repeat 880 902 IPR002885 -
Car19g00495 1024 Pfam PPR repeat 649 673 IPR002885 -
Car19g00495 1024 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 466 IPR002885 -
Car19g00495 1024 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 673 707 IPR002885 -
Car19g00495 1024 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 805 839 IPR002885 -
Car19g00495 1024 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Car19g00495 1024 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 540 570 IPR002885 -
Car19g00495 1024 Pfam PPR repeat family 572 619 IPR002885 -
Car19g00495 1024 Pfam PPR repeat family 804 851 IPR002885 -
Car19g00495 1024 Pfam E motif 924 983 IPR046848 -
Car19g00495 1024 Pfam pfkB family carbohydrate kinase 48 305 IPR011611 -
Car19g00495 1024 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 78 102 IPR002173 GO:0016773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00495 - - - cpep:111776408 1903.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00495 Car-Chr19:6543542 Car18g01000 Car-Chr18:10443025 3.49E-25 dispersed
Car19g00495 Car-Chr19:6543542 Car03g00712 Car-Chr3:6196617 8.09E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g510 . . Bda06g00949 . . . . Bma12g00550 . . . . . . . . Cpe15g00525 . . . . . . . . . . . . . . . . . . . . . Cme01g01480 . . . . . . . . . . . . . . Car19g00495 . . . . . . . . . . . . . . . . . . Chy01g00828 .
Vvi3g563 . . . . . . . . Cmo19g00661 . . . . . . . Cpe15g00525 Bhi05g01201 . . . . . . Cla02g00543 . . . . . . . . . . . Csa07g00783 . Cme01g01469 . . . Bda14g00541 . . . . . . Cmo16g00372 . Cma19g00651 . Car19g00495 . . . . . . . . . . . . . . . . Lsi11g01072 . Chy01g00820 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013461 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00495 Car_Chr19 FPKM 10.30303 13.134767 16.740536 17.210413 2.527253 2.629123 2.608082 13.083959 12.893382 16.625933