Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00501 ATGGAGGACAAGCGCCGCGACGCCGGAAATTTACCGGCAAACAGCACCGATTCTCCGTCATCGGAGCCGCCTTCTTCTCGTCGTCGAGCTGGAGCTCAGAAGCGAAAGGCAAGTACTCTCGGTGGCTCTATCTCCTCATCCGCGCCCTCGAAACGCGTTACTCGCGAAAAATCTGCGCTTTCACATCCACCAAATCATAACGGCCCTTTCACCAGAGCTCGATTTGGCCCTAACAATGTTGCTGGAGCAGCATCGGCTAATGGAGGTCTTGCCTCCGCCGCCGGATCAGTTAAGACGGAAGGCTCTTTACTTCATTCTGAAGTTCAGCGTGGAGACGCGTTGGTCGCCGCGGCGGAGGAATTGAACAAGGCGACTAGATTGGCGAATTTGGAGGCGTCTTTCGAAGCTGATTTCGAAGCCATTAAATCTCGGAGTGCGAATTCTCATGTCGTTCCGAATCATTGCGGTTGGTTTTCGTGGACAGAAGTCCATCCAATTGAGGAACGTTCGATGCCTTCTTTTTTCAGTGGAAAGGATGGCACTCGAAGTCCTGATATATATATCAAGATACGTAATTGGATTATGAAAAAATTCCATGCAAATCCCAGTACGCAGCTTGAAGCAAAAGATCTATCAGAGATGGAAGTTGGAGAACAAGATGCTAGAAAGGAGGTGATGGAGTTTCTTGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTATCTGCAGAATCAATTTCAACAAGTGATCTTGACGATGAAAGTCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTGCCCATCTATTGTTCCGAAGATCAATGTTACCACTGCAGCTCCACCTAGATTGCTTAGAGAATCTGCAATTTCTGAAGAGATGACGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCATGCTCTGCTGATTGCTCTCGGAAACGTTACCACTGCCAGAAGCAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCCGATATGTCTTCATCAGATTTTATTCTCATGGAGTCCGTTGGGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCTGAACATGTGGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAGGATACCTTTCTTGAATCTGAGGATAATGTTGAAGACGGTGCAAAAGAAACTGTTCCACCTTTAACTGAAAATGATTCATCAGTCCCTACTGATATCACTGAATCAATGAATAATAAGGCTACTGAAAAAGAGGCTTCGAATACAGAAACTGCAACCAAGGAAGATACAGGTGAGGTAAAAGTTGGGCTGGATAATTCAAAATCAGAGGATGTTGAAGGAAAAGCTGCTTTAGATAACTCCAAATTAGAAGATGGTGATCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTATGTACTAACACCTGAGCACCCACTATCATTTGCTGATGTAGGGAACCCTGTCATGGCATTGGCATCTTATTTCTTGTTAGCCTATAAGATGCACCAGGTCTGCGCTGCAAATGTGCAGTTTGACGTTCACTTTGCTGCATTCCTTGCACGCTTAGTTGGATCAGATGTTGCCAGTGCATCAGCCCGTTTTTCTTTGAAAAGCGTATCTCAGAAATCTCCCAGTTTAGAACTGGCTACAAGGCACTGCTTTATTTTAGAAGATCCACCAGATGATCAGAAGGCCAAAGCTAATTCAGAGAGTATTGTCAACGTGGAAGCTCAGAAAAATGACAAGGAACAGTGTGCGAAACAGAGACCAGACAATTCTACTTCGGTCTTAGATGACGGAGCCCTATCAGCTAATGACGGTAATAACAAAAATGGAGAATCGGTGACAAAGGAAACTATAGATAATGAAAATTCTTCAGATGCTATTATAGAACACAATCCAATTACTAATCATGATTCAGATAGAACAAGTAATTTGAAAGAATTGAGAGAACCAGAAATACCTGAGGTTGAAAGAACAGGCATTGTGAAGGAATCTGAAAATGTAGAATCAAAATCGACATCAAATCCAGTTGAAAAATTGGGAGAAGGAACTTCTGCTGAAAAACCATCACAACCTAAGTTGTCACCCAAGGATGTTCATATGTCAGATTTGCAACATGCTGAAAAAACTGAGATTCAGAAGCAAGTTCCATCTCATTCTGCCAAAACTAAAAAAGAATTAGATGACGAGCCAAATCATTTACCCTCTGCAAACGAGCCTCAACCAACAATTTCTGCTAATTCTGTGAAAGAAGCCTCAAAAGATGTAGCTATTATACCTGATTCTCACAATGGGAATGAACCTGCAAAAACTGAAACGTCTAAATCCGTGGTTGACCAGGGAGCAAGCAAGGTTGCTGATTCTTTGCCCTCAACAGAGAATGCAACTCCACTACCAGTAAAACCAACTTCGGTTATTGAAAGAGGAGCAGATGATAATCAAAGCAAGGACAACAAAGAAGAAAACTCCAATTGTATGAGTAAAAAAGAGGATAAAATCGACAAGTTGAAGCGTGCTGCGGTTACGACACTGTCAGCAGCAGCAGTGAAGGCAAAAATCCTGGCTAATCAAGAAGAGGACCAAATCCGTCAACTTGCCATGATATTAATCGAAAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGACATGGAAAACGTGACGGTGAGAATGAGGGAGCAACTAGACAGGTCAAAGCAGAGGCTTTTCCAGGAACGTGCACAGATAATCGCTACTCGACTAGGCTTACCTGCTTCGTCATCACGAGGTGGGGCACCAACATTACCAACAAACAGGATGCCCATGAACTTTGCAAACACAGTCCCAAGGCCTCCAATGGGCATGGTTCCCCAAAGGCCCCCGACGTCGGGACTGCCGGGTATGGCTGCCTCTAACCCTAACCCCCAATACCCAACAACCGGTACAACAATTTCTGGGAGTTCATTTCGCCCTGCTAATCAGGACACACTTTCTTCTGTTGGGTCAAAGTAA 3150 43.75 MEDKRRDAGNLPANSTDSPSSEPPSSRRRAGAQKRKASTLGGSISSSAPSKRVTREKSALSHPPNHNGPFTRARFGPNNVAGAASANGGLASAAGSVKTEGSLLHSEVQRGDALVAAAEELNKATRLANLEASFEADFEAIKSRSANSHVVPNHCGWFSWTEVHPIEERSMPSFFSGKDGTRSPDIYIKIRNWIMKKFHANPSTQLEAKDLSEMEVGEQDARKEVMEFLDHWGLINFHPFLSAESISTSDLDDESQKDSLVEKLFHFETLESCPSIVPKINVTTAAPPRLLRESAISEEMTRPEGPSVEYHCNSCSADCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESVGVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDTFLESEDNVEDGAKETVPPLTENDSSVPTDITESMNNKATEKEASNTETATKEDTGEVKVGLDNSKSEDVEGKAALDNSKLEDGDQKVSEDIALNALREAFEAIGYVLTPEHPLSFADVGNPVMALASYFLLAYKMHQVCAANVQFDVHFAAFLARLVGSDVASASARFSLKSVSQKSPSLELATRHCFILEDPPDDQKAKANSESIVNVEAQKNDKEQCAKQRPDNSTSVLDDGALSANDGNNKNGESVTKETIDNENSSDAIIEHNPITNHDSDRTSNLKELREPEIPEVERTGIVKESENVESKSTSNPVEKLGEGTSAEKPSQPKLSPKDVHMSDLQHAEKTEIQKQVPSHSAKTKKELDDEPNHLPSANEPQPTISANSVKEASKDVAIIPDSHNGNEPAKTETSKSVVDQGASKVADSLPSTENATPLPVKPTSVIERGADDNQSKDNKEENSNCMSKKEDKIDKLKRAAVTTLSAAAVKAKILANQEEDQIRQLAMILIEKQLHKLESKLAFFNDMENVTVRMREQLDRSKQRLFQERAQIIATRLGLPASSSRGGAPTLPTNRMPMNFANTVPRPPMGMVPQRPPTSGLPGMAASNPNPQYPTTGTTISGSSFRPANQDTLSSVGSK 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6690362 6698354 + Carg19419-RA Car19g00501 167468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00501 1049 Pfam Zinc finger, ZZ type 309 344 IPR000433 GO:0008270
Car19g00501 1049 MobiDBLite consensus disorder prediction 716 730 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 433 458 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 38 65 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 995 1049 - -
Car19g00501 1049 Pfam SWIRM-associated region 1 892 969 IPR032451 -
Car19g00501 1049 ProSiteProfiles SWIRM domain profile. 149 246 IPR007526 GO:0005515
Car19g00501 1049 MobiDBLite consensus disorder prediction 638 682 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 459 496 - -
Car19g00501 1049 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 367 415 IPR017930 -
Car19g00501 1049 Pfam Myb-like DNA-binding domain 367 409 IPR001005 -
Car19g00501 1049 Pfam SWIRM domain 152 237 IPR007526 GO:0005515
Car19g00501 1049 ProSiteProfiles Zinc finger ZZ-type profile. 307 361 IPR000433 GO:0008270
Car19g00501 1049 MobiDBLite consensus disorder prediction 623 881 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 1 76 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 749 783 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 816 849 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 860 881 - -
Car19g00501 1049 ProSiteProfiles SANT domain profile. 364 415 IPR017884 -
Car19g00501 1049 MobiDBLite consensus disorder prediction 11 27 - -
Car19g00501 1049 ProSitePatterns Zinc finger ZZ-type signature. 312 338 IPR000433 GO:0008270
Car19g00501 1049 MobiDBLite consensus disorder prediction 421 496 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 1011 1049 - -
Car19g00501 1049 ProSiteProfiles Myb-like domain profile. 361 411 IPR001005 -
Car19g00501 1049 MobiDBLite consensus disorder prediction 683 715 - -
Car19g00501 1049 MobiDBLite consensus disorder prediction 786 800 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00501 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101218015 1610.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01147 Car-Chr4:6595970 Car19g00501 Car-Chr19:6690362 3.91E-13 dispersed
Car13g00272 Car-Chr13:4935885 Car19g00501 Car-Chr19:6690362 1.46E-11 dispersed
Car18g00549 Car-Chr18:5176088 Car19g00501 Car-Chr19:6690362 5.27E-09 dispersed
Car11g00935 Car-Chr11:5967822 Car19g00501 Car-Chr19:6690362 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g579 . . . . . . . . Cmo19g00671 . . . . . . . Cpe15g00532 Bhi05g01108 . . . . . . Cla02g00530 Cam02g0548 Cec02g0549 Cco02g0555 Clacu02g0549 Cmu02g0544 Cre02g0875 Cone12ag1145 Cone8ag1193 . . . . . . Blo04g00506 . . Bda14g00547 . . Bma03g00547 . . . . . Cma19g00658 . Car19g00501 . . . . . . . . . . . . . . . . Lsi11g01094 . Chy01g00796 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007586 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 3 1 2 2 1 1 1 1 1 2 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00501 Car_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0