Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00509 ATGACTGCGATCTTAGCTCGGAAATCACTTCTCGCTCTTCGTGCTCGTCAGCTTGCCATCTCTGGACAAGCATTGCAAGGTTCTCGTTTTCATGATCTACGGTCAAGTGCACACTTGTACAGTACCAAAAGAGGTTTTGTTTCTGAAGATGAAGAAAGAGAGCAGCTTGCCAAGGAGATGTCAAAGGATTGGAGTTCAATTTTTGAGCGTAGCATAAACACGTTATTTCTCACTGAAATGGTCCGGGGTTTGATGCTGACTCTTAAATACTTCTTTGAGAAAAAAGTCACTATCAATTATCCATTCGAGAAAGGCCCTCTAAGCCCTCGTTTTCGAGGTGAGCATGCCCTCCGAAGATATACAACTGGAGAAGAACGATGCATTGCATGTAAACTTTGTGAAGCTATTTGCCCTGCTCAAGCAATCACAATCGAAGCTGAGGAACGGGAAGATGGTAGCCGTAGGACCACAAGGTATGACATTGACATGACCAAATGCATCTACTGTGGGTTCTGTCAAGAGGCATGCCCTGTTGACGCCATTGTTGAAGGTCCCAACTTTGAGTTTGCCACAGAGACTCACGAGGAGCTTCTCTATGACAAAGAAAAGTTGCTCGAGAACGGAGACCGCTGGGAGACCGAGATTGCAGAGAACCTCAGATCTGAAAGTCTCTATCGCTGA 681 45.67 MTAILARKSLLALRARQLAISGQALQGSRFHDLRSSAHLYSTKRGFVSEDEEREQLAKEMSKDWSSIFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYTTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6743172 6746717 + Carg19411-RA Car19g00509 167476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00509 226 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 166 177 IPR017900 -
Car19g00509 226 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 127 138 IPR017900 -
Car19g00509 226 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 157 186 IPR017896 -
Car19g00509 226 Pfam 4Fe-4S dicluster domain 126 180 IPR017896 -
Car19g00509 226 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 118 147 IPR017896 -
Car19g00509 226 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 74 210 IPR010226 GO:0016020|GO:0016651|GO:0051539
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00509 K03941 NDUFS8; NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2] - csv:101219679 397.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00221 Car-Chr16:1243474 Car19g00509 Car-Chr19:6743172 8.88E-07 transposed
Car11g00927 Car-Chr11:5928811 Car19g00509 Car-Chr19:6743172 2.49E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g591 . . . . . . . . Cmo19g00680 . . . . . Sed04g3932 Cpe04g00120 Cpe15g00540 Bhi05g01230 Tan02g0799 Cmetu01g2454 . Hepe02g0508 . . Cla02g00522 Cam02g0540 . Cco02g0547 Clacu02g0541 Cmu02g0536 Cre02g0867 Cone12ag1151 Cone8ag1201 . . . . . Cme01g01422 . . . . Bpe15g00868 . . . . . . . Cma19g00666 . Car19g00509 . . . . . . . . . . . . . . . . Lsi11g01103 . Chy01g00788 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010764 0 1 0 0 1 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00509 Car_Chr19 FPKM 25.549601 27.829548 51.55584 50.955605 124.639412 107.900917 130.444748 65.76265 68.84523 70.455719