Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00510 ATGTTATCTTCTTCATCTCTATACTCCAACCCACATCCCCACCTCCGTCTTCTTCATTTCCGCCCTCCCAATCCTCTCTCCAATGTCGTCCTCCACCTCCCCTCCAACCAGAAACCCAACGCCACCGTCGCCTCCGCTGATCTCCGCCGCAACAATCCGACGGAAAAACCATCCACCAACGTCTCCGATCCTATCCAGCCGGAACCCCGCAAACACAACTCCAAATCCGCCGCCCTTGTTAACCAGTACCTATCATCCGGCGAATCCCCAAATCCACAAAACCTAGAACCCCCTTTGCCCGAAGAAGAGAAAGTGAAGCTTCTCGAACTCTCGCTTGTGAGAAAACGAACCCCTCAATTTCCTGGATCGATTTATGTTCAATCCCCGAGTGATTCCGATGTGGGTTCTTCTCTTCCTCCCCTGCAATCTCTGTTTCGAAATGCAGGAAGTGAGTTCGATGGCGAAGATGACCGGAAGATAATAAGGAGAGCTCTAGAGATTCGCCGGAAGGTAACCTCCGAGATCTTCAAGGAGGCGATGCGGAAAGGGAAATTTGGAATCACTTACACCGATAATCTCCTTGGTTGGTTGTCTGATTTCATCGATTTTGTAATGATTCAAGCCGCGTCGATGAAGCAGTTGCCTGAATTTGCTCATTTGTCGTTCAATCTTCGTGCAAAGACCGTCATTGAAGAATCAAATGTGGTACCTCTTATCAGGTGGTTGAAGCATAACTCATTGTCATATCCACAGATAGGTAAGCTCATATGCATGTCGAAGGGAAAGCTTGAATCCATTAGACGTCTTGTGGAATGGCTGAAGGGGATTCATGTAAAGGGAGGATATCTTGGACTTACACTCACTAAAGCTGGAGGGAATATATTGGAGCGCAGCAATGATGAACTAGATGAAATTGTGAGCTACTTAGAGAGTAATGGAGTTAGAATGGTTTGGATTGGCTTTGTTATGAGTCGATGTCCTTATTTGCTGTCTTACAGTTTGGAAGAACTGAAAAGTCGTGTGGAGTTCTTCTTGAATATGGGTATGAATGAGAAAGACTTTGGTACAATGGTCTTTGATTTCCCTAAGGTGCTTGGTCAGTATAGTCTTGAAGATATGAACCAAAAGGTCAACTATTTAAAGGAGTTTGGGCTTGAGATTGAGGATATAGGCAGATTACTGGCATACAAACCACAGTTGATGAATGGTAGCATTGAGGGTAAATGGAAGCCTCTTGTTAAGTACTTCTACTATCTTGGAATTTCCAAAGAGGGTTTGAGGAGGATGCTTACAATAAAGCCAGTGGTTTTCTGCCTTGATCTGGAGACCATCATTGTGCCAAAGGTGCAATTCTTCAGAGACATAGGAGTTCGAGATGACGGGATTAGTAACATGCTTGTGAAGTTTCCATCATTATTGACATTCAGCCTGTACAAGAAAATCCGTCCTGTTGTCATATTCTTGATGACTAAAGCAGGAGTCAGGGAGAAAGACATTGGGAAAGTTATAGCTTTGGGACCGGAACTTTTTGGTTATAGCATAGTGCATAAGCTTGAGGTCAATCTAAAGTATTTTCTGTCACTCGGCATACATACCCGGACTCTAGGAGAAATGATTGCTGATTTTCCTATGCTGCTACGATATAATATCGACATTCTTCGACCAAAGTATCAATATTTGCGGAGAACCATGGTTCGCCCTCTGCAAGATATTATAGACTTTCCAAGGTTTTTCAGCTATTCTCTGGAGGGGCGCATCATTCCTAGGCATCAAGTTCTGGTTGAGAATCATATAAATCTCAATCTGCGTTCCATGTTAGCTTGCACAGATGAAGAGTTTAAGAACAAGGTTGCAGATATAGTGGAAAAACGCCAAAGATTTGAATCCGGTAATGTGGATGGTTCTCTCTCCGTTGTCCATACGACTCGCAACTCTATCGACTCGACTACACTAGATGACTCGTTGGGTGAAACTAGAGAAGATTGA 1986 43.96 MLSSSSLYSNPHPHLRLLHFRPPNPLSNVVLHLPSNQKPNATVASADLRRNNPTEKPSTNVSDPIQPEPRKHNSKSAALVNQYLSSGESPNPQNLEPPLPEEEKVKLLELSLVRKRTPQFPGSIYVQSPSDSDVGSSLPPLQSLFRNAGSEFDGEDDRKIIRRALEIRRKVTSEIFKEAMRKGKFGITYTDNLLGWLSDFIDFVMIQAASMKQLPEFAHLSFNLRAKTVIEESNVVPLIRWLKHNSLSYPQIGKLICMSKGKLESIRRLVEWLKGIHVKGGYLGLTLTKAGGNILERSNDELDEIVSYLESNGVRMVWIGFVMSRCPYLLSYSLEELKSRVEFFLNMGMNEKDFGTMVFDFPKVLGQYSLEDMNQKVNYLKEFGLEIEDIGRLLAYKPQLMNGSIEGKWKPLVKYFYYLGISKEGLRRMLTIKPVVFCLDLETIIVPKVQFFRDIGVRDDGISNMLVKFPSLLTFSLYKKIRPVVIFLMTKAGVREKDIGKVIALGPELFGYSIVHKLEVNLKYFLSLGIHTRTLGEMIADFPMLLRYNIDILRPKYQYLRRTMVRPLQDIIDFPRFFSYSLEGRIIPRHQVLVENHINLNLRSMLACTDEEFKNKVADIVEKRQRFESGNVDGSLSVVHTTRNSIDSTTLDDSLGETRED 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6746795 6751361 - Carg19410-RA Car19g00510 167477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00510 661 MobiDBLite consensus disorder prediction 42 76 - -
Car19g00510 661 Pfam mTERF 258 443 IPR003690 GO:0003690|GO:0006355
Car19g00510 661 Pfam mTERF 306 614 IPR003690 GO:0003690|GO:0006355
Car19g00510 661 MobiDBLite consensus disorder prediction 42 67 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00510 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101220316 1103.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g01053 Car-Chr18:10784751 Car19g00510 Car-Chr19:6746795 3.49E-06 dispersed
Car19g00510 Car-Chr19:6746795 Car13g00406 Car-Chr13:6580347 1.99E-12 dispersed
Car03g00908 Car-Chr3:7169305 Car19g00510 Car-Chr19:6746795 3.57E-07 transposed
Car12g00989 Car-Chr12:9932362 Car19g00510 Car-Chr19:6746795 9.02E-17 transposed
Car14g00979 Car-Chr14:7077340 Car19g00510 Car-Chr19:6746795 2.26E-17 transposed
Car19g00641 Car-Chr19:7752592 Car19g00510 Car-Chr19:6746795 4.73E-18 transposed
Car19g00510 Car-Chr19:6746795 Car03g00923 Car-Chr3:7262070 1.27E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g595 . . . . . . . . . . . . . . . . Cpe15g00541 Bhi05g01232 . . . . . . Cla02g00521 Cam02g0538 Cec02g0541 Cco02g0546 Clacu02g0539 Cmu02g0534 Cre02g0866 Cone12ag1152 . . . . . . Cme01g01421 Blo04g00511 . . Bda14g00552 Bpe15g00867 . Bma03g00551 . . . . . Cma19g00667 . Car19g00510 . . . . . . . . . . . . . . . . Lsi11g01104 . Chy01g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012281 1 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5273 PF02536 mTERF 3.00E-65 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00510 Car_Chr19 FPKM 10.262751 9.817713 11.814395 10.886783 10.275525 8.86237 9.061402 12.443011 13.225242 13.8059