Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00514 ATGGCTTCAATGTCTGCTCATGGGTCAGCTGGTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGAAGGCTTTGGCTGTGTATGATCAAGACACACCTGAGCGATGGCTCAATGTTGCTAAGGCCATTGGTGGGAAAACCGAAGAGGAAGTGAAGAGGCACTACCAACTTCTTTTGAAGGATGTTAAGCAAATTGAGTCTGGTGAAGTTCCTTTCCCATATGGAAGGTCCAGATGA 237 45.99 MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLKDVKQIESGEVPFPYGRSR 78
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6781430 6781666 + Carg19406-RA Car19g00514 167481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00514 78 Gene3D - 4 72 - -
Car19g00514 78 SMART sant 9 61 IPR001005 -
Car19g00514 78 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 74 IPR044636 GO:0003700
Car19g00514 78 ProSiteProfiles Myb-like domain profile. 5 59 IPR001005 -
Car19g00514 78 CDD SANT 12 59 IPR001005 -
Car19g00514 78 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 74 - -
Car19g00514 78 SUPERFAMILY Homeodomain-like 11 67 IPR009057 -
Car19g00514 78 Pfam Myb-like DNA-binding domain 11 59 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00514 - - - csv:101220234 132.109
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car19g00512 Car-Chr19:6766025 Car19g00514 Car-Chr19:6781430 5.06E-41 dispersed
Car19g00513 Car-Chr19:6771403 Car19g00514 Car-Chr19:6781430 3.75E-38 tandem
Car19g00514 Car-Chr19:6781430 Car19g00515 Car-Chr19:6789226 3.24E-42 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g603 . . Bda06g00933 . . . . Bma12g00512 Cmo19g00684 . . . . . . Cpe04g00117 Cpe15g00548 Bhi05g01236 Tan02g0793 Cmetu01g1593 . Hepe02g0502 . . Cla02g00512 Cam02g0522 Cec02g0526 Cco02g0533 Clacu02g0524 Cmu02g0521 Cre02g0854 . . . . . . . Cme01g01408 . Blo13g00551 . . . . . . . . . . Cma19g00673 . Car19g00514 . . . . . . . . . . . . . . . . Lsi11g01111 . Chy01g00779 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5276 PF00249 Myb_DNA-binding 3.50E-06 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00514 Car_Chr19 FPKM 0.757248 1.127378 11.722816 12.685382 4.762987 4.752202 4.895165 78.95295 74.727547 80.281174