Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00518 ATGGAGGATTTGCAGGTGGACAAGAACAGCAAAGAGAAACGGATCAAAACAAGTTCAGAAGAAGAAGAGTTATCCAAAAACAACAACTCAAGCACCACAACAAACAACAACAGAGAAACATCAGCTGATACCTCAAAAGAAAACTCCAAAGCATCAGAGGTTCAAAAGCCTGGTTACATTCATGTCAGAGCAGGCCGTGGCCAAGCCACTGATAGCCACAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAAAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTCGACGAGATTATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAATTATCGACTGTCAATCCAAGGTTGGAGTTCAATGTAGATGATCTCTTCACCAAAGAGGCGATCGGCGAAATGTCATCGGAGATGACAGATCCTTCTTCCTATTTACAATTCAATCCAAACAATCAACAAGTAGTTTCGTGTTCTGGATTAGAAATTGGAATCAATACCTCTGATATCGCACTTGGAAGATCTTTCCCAGAAAATTTCGTGGATTCATCATGCCTCACCTTCAAATCGTTTCAAGTTCTTGATAATATCGATCAATCGATGCAGCAATTTCAAACCTCTTCGGGATGGGACATGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGCCGATCATCAAACGCCTTTTCATCTCATCCATATACAGGTACCATTGAAAGAGGCAATATAAAGATGGAAATGTGA 801 40.2 MEDLQVDKNSKEKRIKTSSEEEELSKNNNSSTTTNNNRETSADTSKENSKASEVQKPGYIHVRAGRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLSTVNPRLEFNVDDLFTKEAIGEMSSEMTDPSSYLQFNPNNQQVVSCSGLEIGINTSDIALGRSFPENFVDSSCLTFKSFQVLDNIDQSMQQFQTSSGWDMDLQNLYNVGFDQGRSSNAFSSHPYTGTIERGNIKMEM 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6820800 6822679 + Carg19402-RA Car19g00518 167485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00518 266 MobiDBLite consensus disorder prediction 24 42 - -
Car19g00518 266 MobiDBLite consensus disorder prediction 1 80 - -
Car19g00518 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 118 IPR011598 GO:0046983
Car19g00518 266 Pfam Helix-loop-helix DNA-binding domain 72 119 IPR011598 GO:0046983
Car19g00518 266 Coils Coil 1 21 - -
Car19g00518 266 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00923 Car-Chr11:5855366 Car19g00518 Car-Chr19:6820800 6.22E-100 dispersed
Car17g01198 Car-Chr17:9166817 Car19g00518 Car-Chr19:6820800 2.19E-46 dispersed
Car19g00518 Car-Chr19:6820800 Car04g02113 Car-Chr4:17212997 2.49E-50 dispersed
Car19g00518 Car-Chr19:6820800 Car02g00257 Car-Chr2:1749504 1.26E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5277 PF00010 HLH 5.80E-07 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00518 - - csv:101216907 384.415