Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00524 AATTCGGCAGTTTTTTTGCAGTCCGTGGAAAGCTTTCAAGCAGCCATGGGGAAGAACAAGAGGTTTAAGGACGGTGGCGAGAAGGGAGCCGCCGCCGGCGATCACTGCCCTTCCAAGGTTTTTGTCAAGAACTTGCCGTACTCGTTCACCAACTCACAGCTTGAAGAAACATTCAGTGATGTTGGACCGGTCCGGCGGTGCTTCATGGTTACGCAGAAGGGTTCAACTGAGCATCGTGGTTACGGATTCGTGCAGTTTGCTGTAGCAGAAGATGCGAATCAAGCAATACAGCAGAAGAATGGGCTGTCTATTGAAGGACGCAAAATTACTGTTAAACATGCAATGCATCGAGCTCCCCTTGAGCAGCGGCGGTCAAAAGAAAATCAAGGTACTGCATCTAAGTCAAAAACTAACAAGGAAGGAGATACTTCTGAAAGGGAAGAACAAACAACTAACGAGGATGGAGATACTTCTAAAAGGGAAGAACAAGCAACTAACGAGGATGGAGATACTTCTGAAAAGGAAGAACAAACAACTAACGAGGATGGAGATGTTTCTAAAAGGGAAGAACAAACAACTTTAAATTCTGAGGGGAGGAAAGAGAGACATTTGAATGCTCAGAAATTGGCTCCACTTTCTAGTTATCTAGAGGATAAAGAGGGTTCTTCAGGAAAGCAAAGGATTGCAAGGACTGTTGTAGTCGGTGGTCTTCTTAATGCTGATATGGCTGAAGATGTTCACCGCCAAGCTAGAGAAGTTGGTGCTGTATGCTCTATTGTTTATCCTCTTCCCAGAAAAGAAGTTGAACAGCATGGCCTTTTACGAGATGGATGCAAAATGGATGTTTCAGCTGTACTTTTTGCTAGTGTTAAGTCTGCACGTGCTGCTGTGACCATATTACATCAGAAAGAGATGCAAGGAGGTGTTGTGTGGGCCCGCCAACTGGGTGGGGAGGGGTCCAAAACTCAGAAATGGAAACTTATTGTCAGAAATCTTCCATTTCAGGCCAAAGAGAAAGAAATAAAGGATACCTTTTCATCTGCAGGATTTGTGTGGGACGTGATGGTGCCACATAGTTCAGACACAGGATTATCGAAGGGTTTTGCGTTTGTCAAATTTACATGCAAGCAGGATGCTGAAAATGCTATTAAAAAGTTCAATGGTCAAAAATTTGGTAAAAGGACAATAGCTGTGGACTGGGCCATTCCGAAGAAGATATATAGTTCAGGTGCTAATGCTCCAGTTGATTCAGATGAAGGGGAAGAGACTGAAAATGACAGAGAAGGTAGCATTAGTAGTGATGATTTGGAAGTTGAAAATGCTGCTGTTCATAACAAATCTCAGCGCTCCGACAAAGATGAAGGTTCTTCAGAGGATTCGGAGAAAGAAGATATTTCCTCGGAGATTGATTTTGAAGGAGAAGCAGAAATTTCAAGAAAAGTACTTGAAAATCTAATTGCATCTTCGGCTAAAGAAGCTCTTCCTTCTCTCATTGATGGTAACCCACCATCTAAAGTGAACAAGGAGCCAGTTCTCGATTCATCAAAGAAGTCACCTGATATGTCTGATAAAGTATCAAATGGTCCCGAAAAGTTAAGTGAAGGCAAAACATCTATTCTTAAGCCAGTCGATGAAGAGGATTTGAAGAGAACAGTTTATATAGGCAATCTTCCATTTGATATTAATAATGAAGAAGTGAAACAGCGGTTTTCTGGATTCGGTGAAGTACTATCCTTCGTACCGGTCCTTCATCAAGTTACAAAACGACCTAGAGGCACTGGTTTTCTCAAGTTTAAAACGGCTGATGCTGCTACTGCTGCTGTTTCGTCTGCGAATGTTGCATCTGGTGTCGGAATATTTCTGAAGGGCAGGCAATTGAAAGTATTGAATGCTCTGGATAAGAAATCAGCTAATGAAAAGGAATTGGAGAAGTCAAAAAATGACAACCTTGACCACCGAAATCTTAACCTTGCACAGGAAGGTATTATTCTCGAGGGAACTCCAGCTGCTGAGGGTGTTTCTGCTAGTGATATGATGAAACGTCAAAGGCTAGAAAAGAAACGAATGACTAAGCTTCAATCTCCGAATTTTCATGTTTCAAGAACTAGGCTCGTTATACACAATTTACCAAAATCAATGAAAGAAAAGGAACTTCAAAAACTTTGCATCGAAGCTGTTACCTCGCGAGCTACAAAGCAAAAACCTGTGATTCGCCAGATTAAATTCTTGAAGGATGTGAAGAAAGGAAAGGAACTGACAAAAAATTACTCTTGTGGAGTTGCTTTCGTCGAGTTTTCTGAGCATCAGCACGCCCTTGTAGCCCTGCGAGTTCTCAACAACAATCCAGAAACTTTTGGCCCTGTGAATCGCCCGATCGTAGAATTCGCTGTAGACAATGTTCAGATGTTGAAGCTACGGAAAGCAAAGTTACAAGCTTCGTATCAGGACAATACTGCCAACGTTCCGAAATCACTGCATCGTAATGCTGATACAAATGCTGGGGATATCCATTCAAACAAGACGAACTCCAGAAAAAGGAAAGCAACAGGCAATAATCGTCCAGTGAAGGAGAAAAATTGCAACGAAAACAAAAATGGCGATCATGTATCCAATGATATGGCGATGGAAGAAAGTAGAGACAGAAAAAAGAGGAAAACTCGTCCAGAAAGTGGTAATAATACAAACGAGTCACCGAAACAAAAACCAGAAGGACGAAGATCAATGCCTGAAAAATCGAGCAAGAGATCGGCACCCATGGATACTGTTAAAACAAAAGCTTCTCAGGAGGCTGATGTACAACACAAAAAGAAGGCAAAACATCAAGTAGAGCAGCACCAGAGGAAGAGGGCAAAGAAAAACAAGTTACCAGTAGGACAGGACGCTGTTGATAAACTCGATAAACTTATCGAACAATATCGATCCAAGTTCTCGCAGAAGAGTTCGGATTCAGCCGATGGTGAAAAGAAAGGCTCTAAACAGGTTAGAAGATGGTTCCAATCATGA 3003 42.06 NSAVFLQSVESFQAAMGKNKRFKDGGEKGAAAGDHCPSKVFVKNLPYSFTNSQLEETFSDVGPVRRCFMVTQKGSTEHRGYGFVQFAVAEDANQAIQQKNGLSIEGRKITVKHAMHRAPLEQRRSKENQGTASKSKTNKEGDTSEREEQTTNEDGDTSKREEQATNEDGDTSEKEEQTTNEDGDVSKREEQTTLNSEGRKERHLNAQKLAPLSSYLEDKEGSSGKQRIARTVVVGGLLNADMAEDVHRQAREVGAVCSIVYPLPRKEVEQHGLLRDGCKMDVSAVLFASVKSARAAVTILHQKEMQGGVVWARQLGGEGSKTQKWKLIVRNLPFQAKEKEIKDTFSSAGFVWDVMVPHSSDTGLSKGFAFVKFTCKQDAENAIKKFNGQKFGKRTIAVDWAIPKKIYSSGANAPVDSDEGEETENDREGSISSDDLEVENAAVHNKSQRSDKDEGSSEDSEKEDISSEIDFEGEAEISRKVLENLIASSAKEALPSLIDGNPPSKVNKEPVLDSSKKSPDMSDKVSNGPEKLSEGKTSILKPVDEEDLKRTVYIGNLPFDINNEEVKQRFSGFGEVLSFVPVLHQVTKRPRGTGFLKFKTADAATAAVSSANVASGVGIFLKGRQLKVLNALDKKSANEKELEKSKNDNLDHRNLNLAQEGIILEGTPAAEGVSASDMMKRQRLEKKRMTKLQSPNFHVSRTRLVIHNLPKSMKEKELQKLCIEAVTSRATKQKPVIRQIKFLKDVKKGKELTKNYSCGVAFVEFSEHQHALVALRVLNNNPETFGPVNRPIVEFAVDNVQMLKLRKAKLQASYQDNTANVPKSLHRNADTNAGDIHSNKTNSRKRKATGNNRPVKEKNCNENKNGDHVSNDMAMEESRDRKKRKTRPESGNNTNESPKQKPEGRRSMPEKSSKRSAPMDTVKTKASQEADVQHKKKAKHQVEQHQRKRAKKNKLPVGQDAVDKLDKLIEQYRSKFSQKSSDSADGEKKGSKQVRRWFQS 1000
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6847546 6856604 + Carg19396-RA Car19g00524 167491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00524 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Car19g00524 1000 MobiDBLite consensus disorder prediction 116 130 - -
Car19g00524 1000 Coils Coil 935 955 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 495 537 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 850 890 - -
Car19g00524 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 702 815 IPR000504 GO:0003723
Car19g00524 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 403 IPR000504 GO:0003723
Car19g00524 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 550 633 IPR000504 GO:0003723
Car19g00524 1000 MobiDBLite consensus disorder prediction 899 918 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 409 470 - -
Car19g00524 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 552 612 IPR000504 GO:0003723
Car19g00524 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Car19g00524 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 396 IPR000504 GO:0003723
Car19g00524 1000 MobiDBLite consensus disorder prediction 816 838 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 980 994 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 510 530 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 138 206 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 816 962 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 975 1000 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 426 456 - -
Car19g00524 1000 MobiDBLite consensus disorder prediction 116 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00524 K14573 NOP4, RBM28; nucleolar protein 4 - csv:101217384 1493.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00574 Car-Chr6:3301004 Car19g00524 Car-Chr19:6847546 1.65E-07 dispersed
Car15g00464 Car-Chr15:2478649 Car19g00524 Car-Chr19:6847546 8.41E-07 dispersed
Car19g00524 Car-Chr19:6847546 Car14g00336 Car-Chr14:1640525 7.59E-09 dispersed
Car19g00524 Car-Chr19:6847546 Car14g01484 Car-Chr14:12320580 1.62E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g6 . . . Bda08g00947 . . Bma05g00433 . . . . . . . . . Cpe15g00552 . . . . . . . . . . . . . . . . Cone3ag1223 Cone10ag1108 . Csa07g00016 . Cme01g01366 . . . . . Bpe05g00327 . . . . . . . . Car19g00524 . . . . . . . . . . . . . . . . Lsi11g01124 . Chy01g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009278 1 1 1 3 1 1 1 1 1 1 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00524 Car_Chr19 FPKM 0.0 0.0 0.100433 0.0 0.0 0.0 0.0 0.3722 0.263305 0.096106