Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00525 GGCTCGCTTTTGATGGCCAAACCCAAGGCTCCGAGGCAAACCCTAGATTCTTACACTGTCAAACGCATCAACAAAACCATCAAAGGTAAAAAAATCCACTCTCTCTTCTTCCTCTTCTTCTTTTTTTGTTGGAATCTTTCAGATGGTTCCGTTTTGGCGTCTGTTTCTGATCTTGCGGAATTTTTCGGACTTTTGTTCTTAGCCGGCGATTGCGTGCTCATGAGGCCCTCCGAACCCTCGAAACCGTCGTATGTAGCAAAGATTGAGAAGATTGAGGCTGATTCTCGTGGGGCCAATGTGAAGGTCCATATTCGCTGGTATTACCGGCCGGAGGAATCAATTGGCGGTCGGAGACAGTTTCATGGGTCGAAGGAGTTGTTTCTCTCCGACCATTACGACGTTCAAAGTGCCGACACCATCGAGGGGAAGTGTACGGTTCATACATTTAAGAGTTATACCAAGCTTGATGCCGTCGGAAATGAAGATTATTTTTGCCGCTTCGACTATAATTCCACTACTGGAGCTTTCAATCCGGATCGAGTGGCTGTGTATTGCAAATGTGAGATGCCTTATAATCCCGACGACCTAATGGTTCAGTGCGAGAGCTGCACTGATTGGTTTCATCCCGCTTGTATAGAAATGACTGCAGAAGAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGCTGTTCTTCAGAGGATCAAAAGCTGCCGAGTTCACAGTCTACATCTAAATTTGCAGAGACAAAGATCCTTAACGTAGCATGTGACAGTCGTGTCATGCACATACTTTTTTGGTTGTTGGTTGAATTTCATTCTTATCTTAGGTGGATACAAAACGACGCCGGAGGTGACGATAGTGTAAATATACAAAATACGGTGACTTAG 888 44.71 GSLLMAKPKAPRQTLDSYTVKRINKTIKGKKIHSLFFLFFFFCWNLSDGSVLASVSDLAEFFGLLFLAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHIRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKSYTKLDAVGNEDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCTDWFHPACIEMTAEEAKKLDHFFCESCSSEDQKLPSSQSTSKFAETKILNVACDSRVMHILFWLLVEFHSYLRWIQNDAGGDDSVNIQNTVT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6857897 6861434 + Carg19395-RA Car19g00525 167492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00525 295 Pfam PHD-finger 184 232 IPR019787 -
Car19g00525 295 ProSitePatterns Zinc finger PHD-type signature. 185 230 IPR019786 -
Car19g00525 295 ProSiteProfiles BAH domain profile. 64 180 IPR001025 GO:0003682
Car19g00525 295 Pfam BAH domain 68 179 IPR001025 GO:0003682
Car19g00525 295 ProSiteProfiles Zinc finger PHD-type profile. 182 233 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00525 - - - mcha:111007651 399.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car18g00528 Car-Chr18:4155989 Car19g00525 Car-Chr19:6857897 1.11E-101 dispersed
Car19g00525 Car-Chr19:6857897 Car02g01219 Car-Chr2:8273921 1.70E-08 dispersed
Car11g00921 Car-Chr11:5838219 Car19g00525 Car-Chr19:6857897 2.64E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000538 4 7 4 5 4 2 5 3 2 2 2 2 4 3 2 4 2 4 5 2 2 3 3 3 3 3 3 10 9 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5278 PF01426 BAH 1.40E-21 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00525 Car_Chr19 FPKM 1.574423 1.41211 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0