Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car19g00533 ATGAAGTTGGAGACGGCGTTATTGGAGCAAAGGGATTTCGATGATATGAAAGAGAATACAGGGGAGGAGGAGGAGGAGGAGAAGGCTGTGACTGAATTTGTGGATGGCGAGATGTTAAATGAAACGGTCTTGGTTGGTGTAGCTGAAAATCAGGTCGAGGGTGACGTTCCGATGGCGAATTTTCCAGAGGACACGGTTGGAGAAGGCTCGGGTGCAGTTGGCTGCGCAGAGACAACCGAGAAGACATGCCTGAGTGATGTTTTGGCTGAGGAAACGCTTGTAGATGGAGCTGATGCTACCAATTTGGTGCATAAGACAGTGGAGGAAGAGAATGCTGATGACTCCGACGACTCTAAGGATACAGAGGTTCCAAAGCAAGAAAATTTTTCTTTGGAGGAAAGGGAATTAGGCATCCCGGTTCGGCTGGAAGAGAACTCTGAGTTAAAAGATAGTTTGGTAGATGAGGCTGTGGTGGAGGAGGGACTGGCGACGAATTTAGCGGATAGCACGACGGATGAGGTGGGGCTGCCACATTTTGTTGGGAAGATCGATGAGGCGGTAAATGTAGAAAATGCTGAAGACAAGACTGCTGAGATGGACGGAATATGTATGGGAAACAAGGCTACCGATGCGGCGATGATGGAAAATTCGGCACATGAAACCCCAGAGATCAAGGCAGTAGACATAGCAGACTATGGTATCGAGGCGTTGAAGATCGAGAACATGGAAGATAAGGAAGTGGGGGTTCAGGGATTGGGTTCGGCCGATGAGAGCGTCGAGGTTGGAAAGATTGAGAATATGGCAGGTGAGACTGCAGAGGCCGAGGGAGTGCAAGTGACAGACTACACCCCGGAAATGGTAAAATCTGAGAATGTGGAAGATAACAGGACTGCACAAGTTGAGGAAATAGCTATGGCCGAAGAGACTGCAGAGGCCGACGACGACATGGTTTATTTGGTGGACGAAGGGATTGGGTCGGAGGAGACTGATGCAAACATGACATACTTGGTGGAGGAGACAGAAGCAGGAGAGGAGGCTGAGGAGATGGATATTACGGAGGAGGTCGATGAGGCAAATAAAGGTAGCAGTGGTGCGAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAGCTAGAGCGCCTTCTAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGACCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCTTCTTGTATTAATCGCGACGAGGCATTCTTCCGAGCCAAGGGTCGATGGAACTGTGGTTGGCATCTTTGTAGCAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACATTTTCCTTGTGCAAGAGCTGCACAAAAAATGCTGTTATTTTATGTGTTAGAGGGAACAAAGGCTTCTGCGAGGCGTGCATGAGATTTGTTATGTTGATCGAAAAGAAGGAGCAGGGGAATACCGAAAAGGGCCAAATTGATTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGACAGAGATGAAGGGAAAACTTTCTCTAACTTTTGACGAACTTGTTCACGCAAAAAACCCGTGGAAAGGATCTGAGACGCTAACTAACAGACCCGATTCACCTAGTGAGCTATGTGATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGCTCTAAGAGAAAAAAAGCTAAGAAAAAGTCAAAATCTCATGCAAAGGAAATGAGTTCGCCTAGTATGCCAGTTATACCTGATTCTCAAGGGCTATCCACGGATACCGATGTCGAGTGGGCATCTAAAGAGCTCTTGGAGTTCGTAATACACATGAAAAATGGCGATAAAACCGTTTTATCTCAGTTTGATGTTCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATTTGTGATTCAAGACTCGAGAATTTATTTGGAAAGCCACGCGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAAGATGCCCAGATAAATGACTACCAAGCGAGTGTCGCCGATACCGAATCTAATCAGTTGGAGGCTGATGGGAACACTGAGGCGTCGGGGAAGACTAAGAAAGAGAAGAAACGCAGGTATCGGAAAAAAGGGGATGAGAGAGGAATGCAGAGTAACCTTGATGACTATGCAGCCATTGATACTCACAACATTAACTTGATTTACTTGAGACGTAATTTGGTAGAATATCTGATTGAAGACGAGGAGAGTTTTCACGACAAGGTTGTTGGTTCTTTTGTGAGGATACGAATATCGGGCAATGCACAGAAACAAGATTTATATCGGCTGGTTCAAGTTGTAGGTACAAGCAAAGCATCCGAGCCTTATAAAGTTGGTAAAAAGATGACGTATATCATGCTGGAGATCTTGAATTTGAATAAGACAGAAGTGATTTCAATCGATATTATCTCGAATCAAGAGTTCACAGAGGAGGAGTGCAAGCGTCTCAGGCAGAGCATCAAGTGTGGAATCCTTAACCGTTTGACTGTGGGTGACCTCCATGAGAGAGCAATGTCCCTTCAAGATGCTAGAGTAAAGGATTGGATGGAAACCGAGATAGTTCGACTAAGTCATCTTCGTGATCGAGCAAGCGAAAAAGGGCGTCGAAAAGAATATCCTTTTTTCAATAGTTCGGAATGCGTCGAGAAACTACAGCTTTTGAAGACGCCGGAGGAGCGGCAGCGCAGACGAGAGGAAATACCAGAAATACATGCAGACCCTAATATGGATCCAAGCCATGAATCTGAAGATGAAGATGAAGCAGATGATAAGAGACAAGAAACCTATACGTCATCGAGAGGCACGAGCTTTGGCAGGAGGACGAGGGAGCCGGTTTCTCCTGGAAAAGGAGTTTCAAATTTGAACGATTCCTGGAGCGCAACCAGGAACTTCTCAAACACGACTCGGGACTTGACCAGGAACTCGTCTGGGAAAGGCTTCTCGATCCAAGGCGACGATGCCATTGGTTCTGGTGAAATCATAAATGAAAATTCTTGGAGTCAAGGAAGAGATAGAGATGTTAAACAAACAAACAAGTGGGACAAGCAACAAGTTTCACCCAGTTCGGATATCGCTGCTAGGAATATCTCGTCCGGGGCAGCAGCAGCCGAGTTGTCTTCTGCATCTCACTCGGTGAATCCAGCAGCATCTCCATTGGTTGGAACTACACAGAATGCTGCTGCCATTGTTAATGAAACCGAGAAGATATGGCGTTATCAGGATCCATCTGGGAAAGTTCAGGGACCGTTTTCGATGGTGCAGCTACGTAAATGGAGCAACACAGGCTATTTTCCTGCAGACTTGAAAGTATGGAGAGCCTCAGACAAGCAAGACGACTCCCTGCTTTTGACCGATGTCTTGGCCGGGAAGATCCCGAAGGACACTCCATTGACGAATAACAGCTTCCAAGTAAACACGCATGCTTCTTCATTTGTTGGGAAGCCTCAGGGAGGAGCCGTTTTGCAGTCAGGTATGGATGGTCAGAATACTAATCCGACTTCTTATGGCCAGTCGTCTGGAGGAAGATGGAAATCTGAAAATGAAGTTAGCCCTACGGGTAGACCTGCCTCGACTCCGGTAGAAGTCCCCAGGTACTCGGGAGACCGATGGTCTTCTGACCACGGTATTATGAACTTCACAAGGCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACAAAGGAGCAGCAGCAGCCATTTCAAGTGGCTGCATCGTTCTTGCACAATTCTTCACTTATGCAACGCTCTGAAAACGACTCGTTACGCTCGAATTCTGGCCTGAATTCAGCCGAAAAGGGCACGGGTTTAGGTCCTATGAATGTGCTTCAAAATCATCATTCTCAGCCAGTAAGACAATCACCTATCATGGGTGATGCTTCGGTCTATCCAGCTGCAGATATCAAAAGCATCAGCGCAAATCTTCATTGTTTAGTACAATCCATCAACAATCGTAATACTCCTATGGAAGCTCAAGGACATGGGTCTAGCGCTGTTCAGAATGCACCATCTCTCAAACTTGAATCAAACCTTTCTTCTACCATGCCACCAGCACAAACTCTTCTGAGTCGTTGGGGGGAGATGCCCCCTGCTACGTCGTTCAGTGCAGGAAGTTCAACCACGAGTTTCTCCATGCCCGGTTTGACGAGTTTTCCATCCTCGGACCCTTGGCGATCTACGCCTCCTATTCCCAGTAACCCGCCGCACGTTCAGTCTTCAACTCCAGCCAATCTACCTCGGGGAATGGGTGCTCCAGACGGCCAAAGTACCGTTCCACGACTGGGCTCGGAGACTCCGAACCCAGGCTGGGGATCAATGCCAAACATGGGTCGAGGTTCAATTGCAGCACCACCTCCAAATGCTACTGCTGGTATGATGTGGGGAACTGCTCCTCCTACAGGTACAAACCCAGGTTGGATTGCTCCAGGTCAAGGACCACCAACCGGAAACAACCTCCAAGGATGGTCCGCACATGGCCCGATGCCACCTCCAGTAAACGCTACTCCGGGATGGGTTGCCCCCAGCCATGGACCAATGCCACCTATGAACATGAATCCCAGTTGGCCCGTCCCGTACCCGAATCAGAACATGTGGGGTAACGAGCACGGTAGAAATGGGGATAGATTCTCGAATCAAAAGGACGGTGGCTCTCACGGCGGAGATCCGGGGAACGGAGGTAAATCATGGGGGATGCAACCATCTTATGGTGGTGGTGGGAGTTCTTGGTCTCCTTATAATAAAGCACAAAAACTGTGCAAATACCATGAAAGTGGACACTGCAAGAAAGGAGGTGCTTGTGATTACAGGCACAACTAG 4905 47.34 MKLETALLEQRDFDDMKENTGEEEEEEKAVTEFVDGEMLNETVLVGVAENQVEGDVPMANFPEDTVGEGSGAVGCAETTEKTCLSDVLAEETLVDGADATNLVHKTVEEENADDSDDSKDTEVPKQENFSLEERELGIPVRLEENSELKDSLVDEAVVEEGLATNLADSTTDEVGLPHFVGKIDEAVNVENAEDKTAEMDGICMGNKATDAAMMENSAHETPEIKAVDIADYGIEALKIENMEDKEVGVQGLGSADESVEVGKIENMAGETAEAEGVQVTDYTPEMVKSENVEDNRTAQVEEIAMAEETAEADDDMVYLVDEGIGSEETDANMTYLVEETEAGEEAEEMDITEEVDEANKGSSGAKRKRGKNSKAPARAPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKSCTKNAVILCVRGNKGFCEACMRFVMLIEKKEQGNTEKGQIDFNDKNSWEYLFKEYWTEMKGKLSLTFDELVHAKNPWKGSETLTNRPDSPSELCDVDGGSDLDVSENEESGSSKRKKAKKKSKSHAKEMSSPSMPVIPDSQGLSTDTDVEWASKELLEFVIHMKNGDKTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQINDYQASVADTESNQLEADGNTEASGKTKKEKKRRYRKKGDERGMQSNLDDYAAIDTHNINLIYLRRNLVEYLIEDEESFHDKVVGSFVRIRISGNAQKQDLYRLVQVVGTSKASEPYKVGKKMTYIMLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLHERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKEYPFFNSSECVEKLQLLKTPEERQRRREEIPEIHADPNMDPSHESEDEDEADDKRQETYTSSRGTSFGRRTREPVSPGKGVSNLNDSWSATRNFSNTTRDLTRNSSGKGFSIQGDDAIGSGEIINENSWSQGRDRDVKQTNKWDKQQVSPSSDIAARNISSGAAAAELSSASHSVNPAASPLVGTTQNAAAIVNETEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLKVWRASDKQDDSLLLTDVLAGKIPKDTPLTNNSFQVNTHASSFVGKPQGGAVLQSGMDGQNTNPTSYGQSSGGRWKSENEVSPTGRPASTPVEVPRYSGDRWSSDHGIMNFTRLPSPTPSSGGTKEQQQPFQVAASFLHNSSLMQRSENDSLRSNSGLNSAEKGTGLGPMNVLQNHHSQPVRQSPIMGDASVYPAADIKSISANLHCLVQSINNRNTPMEAQGHGSSAVQNAPSLKLESNLSSTMPPAQTLLSRWGEMPPATSFSAGSSTTSFSMPGLTSFPSSDPWRSTPPIPSNPPHVQSSTPANLPRGMGAPDGQSTVPRLGSETPNPGWGSMPNMGRGSIAAPPPNATAGMMWGTAPPTGTNPGWIAPGQGPPTGNNLQGWSAHGPMPPPVNATPGWVAPSHGPMPPMNMNPSWPVPYPNQNMWGNEHGRNGDRFSNQKDGGSHGGDPGNGGKSWGMQPSYGGGGSSWSPYNKAQKLCKYHESGHCKKGGACDYRHN 1634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6912942 6921266 - Carg19387-RA Car19g00533 167500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car19g00533 1634 MobiDBLite consensus disorder prediction 1558 1605 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 922 943 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 1180 1228 - -
Car19g00533 1634 ProSiteProfiles SWIB/MDM2 domain profile. 602 685 IPR003121 -
Car19g00533 1634 MobiDBLite consensus disorder prediction 108 128 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 1 17 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 980 1013 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 341 380 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 1279 1298 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 535 601 - -
Car19g00533 1634 Pfam SWIB/MDM2 domain 610 683 IPR003121 -
Car19g00533 1634 MobiDBLite consensus disorder prediction 1187 1219 - -
Car19g00533 1634 Pfam Plus-3 domain 749 852 IPR004343 GO:0003677
Car19g00533 1634 Pfam GYF domain 1102 1143 IPR003169 GO:0005515
Car19g00533 1634 ProSiteProfiles GYF domain profile. 1099 1153 IPR003169 GO:0005515
Car19g00533 1634 MobiDBLite consensus disorder prediction 1390 1468 - -
Car19g00533 1634 ProSiteProfiles Zinc finger PHD-type profile. 387 453 IPR019787 -
Car19g00533 1634 ProSiteProfiles Zinc finger C3H1-type profile. 1609 1634 IPR000571 GO:0046872
Car19g00533 1634 ProSiteProfiles Plus3 domain profile. 744 877 IPR004343 GO:0003677
Car19g00533 1634 MobiDBLite consensus disorder prediction 922 1055 - -
Car19g00533 1634 ProSitePatterns Zinc finger PHD-type signature. 390 450 IPR019786 -
Car19g00533 1634 MobiDBLite consensus disorder prediction 1279 1295 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 702 733 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 1395 1419 - -
Car19g00533 1634 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car19g00533 - - - csv:101218325 2407.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car16g00676 Car-Chr16:4288468 Car19g00533 Car-Chr19:6912942 0 dispersed
Car19g00533 Car-Chr19:6912942 Car19g00890 Car-Chr19:9191550 7.34E-33 dispersed
Car04g00831 Car-Chr4:4847993 Car19g00533 Car-Chr19:6912942 9.63E-71 transposed
Car12g00619 Car-Chr12:4205383 Car19g00533 Car-Chr19:6912942 1.21E-50 transposed
Car11g00907 Car-Chr11:5746153 Car19g00533 Car-Chr19:6912942 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
5279 PF03126 Plus-3 3.10E-24 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car19g00533 Car_Chr19 FPKM 54.194107 58.47229 12.757962 9.973082 584.406189 774.739319 565.09906 796.222229 882.441101 793.009583